KEGG   PATHWAY: rak00020
Entry
rak00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia akari
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rak00020  Citrate cycle (TCA cycle)
rak00020

Module
rak_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rak00020]
rak_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rak00020]
rak_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rak00020]
rak_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rak00020]
Other DBs
GO: 0006099
Organism
Rickettsia akari [GN:rak]
Gene
A1C_06540  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
A1C_06180  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A1C_01920  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A1C_01300  kgd; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
A1C_01295  dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
A1C_06210  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1C_04135  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1C_03215  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
A1C_03220  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
A1C_00955  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A1C_00380  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
A1C_00930  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
A1C_00940  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
A1C_05130  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A1C_02825  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A1C_01885  Pyruvate dehydrogenase e1 component, alpha subunit precursor [KO:K00161] [EC:1.2.4.1]
A1C_01890  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
A1C_03755  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rak00010  Glycolysis / Gluconeogenesis
rak00061  Fatty acid biosynthesis
rak00071  Fatty acid degradation
rak00190  Oxidative phosphorylation
rak00220  Arginine biosynthesis
rak00250  Alanine, aspartate and glutamate metabolism
rak00280  Valine, leucine and isoleucine degradation
rak00350  Tyrosine metabolism
rak00470  D-Amino acid metabolism
rak00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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