KEGG   PATHWAY: rbl00020
Entry
rbl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fuscovulum blasticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rbl00020  Citrate cycle (TCA cycle)
rbl00020

Module
rbl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rbl00020]
rbl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rbl00020]
rbl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rbl00020]
rbl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rbl00020]
rbl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rbl00020]
Other DBs
GO: 0006099
Organism
Fuscovulum blasticum [GN:rbl]
Gene
B6K69_03820  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B6K69_00940  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B6K69_02625  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B6K69_07675  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B6K69_07680  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B6K69_02670  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B6K69_07705  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B6K69_07670  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B6K69_07665  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B6K69_08630  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
B6K69_07595  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B6K69_07575  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B6K69_07605  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B6K69_07600  succinate dehydrogenase [KO:K00242]
B6K69_16370  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B6K69_07640  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B6K69_15580  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B6K69_12765  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B6K69_01095  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B6K69_01090  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
B6K69_01085  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
B6K69_17285  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rbl00010  Glycolysis / Gluconeogenesis
rbl00053  Ascorbate and aldarate metabolism
rbl00061  Fatty acid biosynthesis
rbl00071  Fatty acid degradation
rbl00190  Oxidative phosphorylation
rbl00220  Arginine biosynthesis
rbl00250  Alanine, aspartate and glutamate metabolism
rbl00280  Valine, leucine and isoleucine degradation
rbl00350  Tyrosine metabolism
rbl00470  D-Amino acid metabolism
rbl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system