KEGG   PATHWAY: rcm00020
Entry
rcm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia canadensis McKiel
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcm00020  Citrate cycle (TCA cycle)
rcm00020

Module
rcm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rcm00020]
rcm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rcm00020]
rcm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rcm00020]
rcm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rcm00020]
Other DBs
GO: 0006099
Organism
Rickettsia canadensis McKiel [GN:rcm]
Gene
A1E_05405  citrate synthase [KO:K01647] [EC:2.3.3.1]
A1E_05095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A1E_01530  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A1E_00930  kgd; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
A1E_00935  dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
A1E_05125  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1E_02490  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1E_03185  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
A1E_03180  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
A1E_00655  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A1E_00210  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
A1E_00640  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
A1E_00650  hypothetical protein [KO:K00242]
A1E_04395  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A1E_03540  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A1E_01500  lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [KO:K00161] [EC:1.2.4.1]
A1E_01505  dihydrolipoamide acetyltransferase [KO:K00162] [EC:1.2.4.1]
A1E_02755  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rcm00010  Glycolysis / Gluconeogenesis
rcm00061  Fatty acid biosynthesis
rcm00190  Oxidative phosphorylation
rcm00220  Arginine biosynthesis
rcm00250  Alanine, aspartate and glutamate metabolism
rcm00280  Valine, leucine and isoleucine degradation
rcm00470  D-Amino acid metabolism
rcm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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