KEGG   PATHWAY: rcn00020
Entry
rcn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rosa chinensis (China rose)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcn00020  Citrate cycle (TCA cycle)
rcn00020

Module
rcn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rcn00020]
rcn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rcn00020]
rcn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rcn00020]
Other DBs
GO: 0006099
Organism
Rosa chinensis (China rose) [GN:rcn]
Gene
112173298  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
112190044  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
112179486  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
112197739  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
112198052  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
112200382  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
112186046  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
112186109  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112167198  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112190501  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112189778  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112192647  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
121052897  isocitrate dehydrogenase [NADP] peroxisomal-like [KO:K00031] [EC:1.1.1.42]
112172665  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
112191818  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
112188192  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial [KO:K00030] [EC:1.1.1.41]
112182627  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
112182630  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
112185831  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
112166144  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
112200427  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
112197861  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
112179947  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
112169100  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112187731  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
112186853  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
112184021  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
112173241  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
112173242  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
112198066  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
112201569  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
112170475  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112177143  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112188803  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
112202187  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
112164493  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X2 [KO:K01610] [EC:4.1.1.49]
112175314  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
112188193  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
112182161  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
112197594  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
112166142  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
112199883  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
112182239  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
112174081  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
112186112  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
112197645  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rcn00010  Glycolysis / Gluconeogenesis
rcn00053  Ascorbate and aldarate metabolism
rcn00061  Fatty acid biosynthesis
rcn00062  Fatty acid elongation
rcn00071  Fatty acid degradation
rcn00190  Oxidative phosphorylation
rcn00220  Arginine biosynthesis
rcn00250  Alanine, aspartate and glutamate metabolism
rcn00280  Valine, leucine and isoleucine degradation
rcn00350  Tyrosine metabolism
rcn00470  D-Amino acid metabolism
rcn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system