KEGG   PATHWAY: rco00020
Entry
rco00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia conorii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rco00020  Citrate cycle (TCA cycle)
rco00020

Module
rco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rco00020]
rco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rco00020]
rco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rco00020]
rco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rco00020]
Other DBs
GO: 0006099
Organism
Rickettsia conorii [GN:rco]
Gene
RC1308  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RC1233  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RC0353  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RC0227  sucA; 2-oxoglutarate dehydrogenase e1 component [KO:K00164] [EC:1.2.4.2]
RC0226  sucB; dihydrolipoamide acetyltransferase component [KO:K00658] [EC:2.3.1.61]
RC0693  pdhD; dihydrolipoamide dehydrogenase precursor [KO:K00382] [EC:1.8.1.4]
RC1239  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RC0598  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
RC0599  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
RC0170  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RC0069  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
RC0168  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
RC0169  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
RC1012  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RC0520  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RC0347  pdhA; pyruvate dehydrogenase e1 component, alpha subunit precursor [KO:K00161] [EC:1.2.4.1]
RC0348  pdhB; pyruvate dehydrogenase e1 component, beta subunit precursor [KO:K00162] [EC:1.2.4.1]
RC0764  pdhC; dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rco00010  Glycolysis / Gluconeogenesis
rco00061  Fatty acid biosynthesis
rco00071  Fatty acid degradation
rco00190  Oxidative phosphorylation
rco00220  Arginine biosynthesis
rco00250  Alanine, aspartate and glutamate metabolism
rco00280  Valine, leucine and isoleucine degradation
rco00350  Tyrosine metabolism
rco00470  D-Amino acid metabolism
rco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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