KEGG   PATHWAY: rde00470
Entry
rde00470                    Pathway                                
Name
D-Amino acid metabolism - Roseobacter denitrificans
Class
Metabolism; Metabolism of other amino acids
Pathway map
rde00470  D-Amino acid metabolism
rde00470

Other DBs
GO: 0046416
Organism
Roseobacter denitrificans [GN:rde]
Gene
RD1_3240  alr; alanine racemase [KO:K01775] [EC:5.1.1.1]
RD1_1004  dat; D-alanine aminotransferase [KO:K00824] [EC:2.6.1.21]
RD1_3351  ddlB; D-alanine--D-alanine ligase [KO:K01921] [EC:6.3.2.4]
RD1_2684  glsA; glutaminase A [KO:K01425] [EC:3.5.1.2]
RD1_2264  phosphoribosylformylglycinamidine synthase I [KO:K23265] [EC:6.3.5.3 3.5.1.2]
RD1_3228  murI; glutamate racemase, putative [KO:K01776] [EC:5.1.1.3]
RD1_3361  murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
RD1_1002  conserved hypothetical protein [KO:K26272] [EC:2.3.1.312]
RD1_1003  conserved hypothetical protein [KO:K19802] [EC:5.1.1.20 5.1.1.25]
RD1_0818  aspartate racemase, probable [KO:K01779] [EC:5.1.1.13]
RD1_0813  dapF; diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
RD1_1595  lysA; diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
rde00010  Glycolysis / Gluconeogenesis
rde00020  Citrate cycle (TCA cycle)
rde00250  Alanine, aspartate and glutamate metabolism
rde00260  Glycine, serine and threonine metabolism
rde00270  Cysteine and methionine metabolism
rde00300  Lysine biosynthesis
rde00310  Lysine degradation
rde00330  Arginine and proline metabolism
rde00340  Histidine metabolism
rde00360  Phenylalanine metabolism
rde00550  Peptidoglycan biosynthesis
rde00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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