KEGG   PATHWAY: rde00010
Entry
rde00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Roseobacter denitrificans
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rde00010  Glycolysis / Gluconeogenesis
rde00010

Module
rde_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rde00010]
rde_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rde00010]
rde_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rde00010]
Other DBs
GO: 0006096 0006094
Organism
Roseobacter denitrificans [GN:rde]
Gene
RD1_0218  fba; fructose-bisphosphate aldolase, putative [KO:K01624] [EC:4.1.2.13]
RD1_0335  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
RD1_0633  ald; aldehyde dehydrogenase family protein, putative [KO:K00128] [EC:1.2.1.3]
RD1_0660  ald; aldehyde dehydrogenase family protein, putative [KO:K00128] [EC:1.2.1.3]
RD1_0887  flhA; glutathione-dependent formaldehyde dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
RD1_1007  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
RD1_1117  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RD1_1376  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RD1_1603  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RD1_1948  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
RD1_2270  fda; fructose-bisphosphate aldolase, class I [KO:K01623] [EC:4.1.2.13]
RD1_2332  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RD1_2537  glpX; fructose-1,6-bisphosphatase, class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
RD1_2720  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
RD1_2870  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
RD1_2880  gap; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
RD1_2961  tpiA; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
RD1_2984  gap; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
RD1_2995  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RD1_3008  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
RD1_3011  pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
RD1_3013  pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
RD1_3014  pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
RD1_3109  galM; aldose 1-epimerase, putative [KO:K01785] [EC:5.1.3.3]
RD1_3142  eno; enolase [KO:K01689] [EC:4.2.1.11]
RD1_3670  [KO:K00382] [EC:1.8.1.4]
RD1_3776  glk; glucokinase, putative [KO:K00845] [EC:2.7.1.2]
RD1_3806  flhA; glutathione-dependent formaldehyde dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rde00020  Citrate cycle (TCA cycle)
rde00030  Pentose phosphate pathway
rde00500  Starch and sucrose metabolism
rde00620  Pyruvate metabolism
rde00640  Propanoate metabolism
rde00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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