KEGG   PATHWAY: red00020
Entry
red00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseibacterium elongatum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
red00020  Citrate cycle (TCA cycle)
red00020

Module
red_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:red00020]
red_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:red00020]
red_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:red00020]
red_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:red00020]
red_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:red00020]
Other DBs
GO: 0006099
Organism
Roseibacterium elongatum [GN:red]
Gene
roselon_03151  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
roselon_03277  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
roselon_02138  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
roselon_03035  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
roselon_01344  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
roselon_01735  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
roselon_01736  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
roselon_01740  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
roselon_02604  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
roselon_01733  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
roselon_01732  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
roselon_01721  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
roselon_01720  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
roselon_01723  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
roselon_01722  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
roselon_02752  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
roselon_01728  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
roselon_03460  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
roselon_01510  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
roselon_02474  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
roselon_02473  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
roselon_02196  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
red00010  Glycolysis / Gluconeogenesis
red00053  Ascorbate and aldarate metabolism
red00061  Fatty acid biosynthesis
red00071  Fatty acid degradation
red00190  Oxidative phosphorylation
red00220  Arginine biosynthesis
red00250  Alanine, aspartate and glutamate metabolism
red00280  Valine, leucine and isoleucine degradation
red00350  Tyrosine metabolism
red00470  D-Amino acid metabolism
red00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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