KEGG   PATHWAY: rga00020
Entry
rga00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium gallicum bv. gallicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rga00020  Citrate cycle (TCA cycle)
rga00020

Module
rga_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rga00020]
rga_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rga00020]
rga_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rga00020]
rga_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rga00020]
rga_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rga00020]
Other DBs
GO: 0006099
Organism
Rhizobium gallicum bv. gallicum [GN:rga]
Gene
RGR602_PB00370  gltA-2; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RGR602_CH01979  citrate synthase protein [KO:K01647] [EC:2.3.3.1]
RGR602_CH01980  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RGR602_CH01818  gltA-1; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
RGR602_CH03859  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RGR602_CH02108  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
RGR602_CH03808  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RGR602_CH03806  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
RGR602_CH01832  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RGR602_CH03803  dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
RGR602_PC01286  lpdV; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RGR602_CH03809  sucD; succinyl-CoA synthetase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
RGR602_CH03810  sucC; succinyl-CoA synthetase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
RGR602_CH03815  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RGR602_CH03814  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RGR602_CH03817  sdhC; succinate dehydrogenase cytochrome B556 subunit [KO:K00241]
RGR602_CH03816  sdhD; succinate dehydrogenase SdhD subunit [KO:K00242]
RGR602_CH02157  fumA; fumarate hydratase class 1 [KO:K01676] [EC:4.2.1.2]
RGR602_CH02155  fumC; fumarate hydratase class 2 [KO:K01679] [EC:4.2.1.2]
RGR602_CH03811  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RGR602_CH03959  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RGR602_CH00038  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RGR602_CH01827  pdhA; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
RGR602_CH01828  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
RGR602_CH01829  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rga00010  Glycolysis / Gluconeogenesis
rga00053  Ascorbate and aldarate metabolism
rga00061  Fatty acid biosynthesis
rga00071  Fatty acid degradation
rga00190  Oxidative phosphorylation
rga00220  Arginine biosynthesis
rga00250  Alanine, aspartate and glutamate metabolism
rga00280  Valine, leucine and isoleucine degradation
rga00350  Tyrosine metabolism
rga00470  D-Amino acid metabolism
rga00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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