KEGG   PATHWAY: rho00020
Entry
rho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseburia hominis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rho00020  Citrate cycle (TCA cycle)
rho00020

Module
rho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rho00020]
rho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rho00020]
rho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rho00020]
Other DBs
GO: 0006099
Organism
Roseburia hominis [GN:rho]
Gene
RHOM_07980  citrate synthase [KO:K01647] [EC:2.3.3.1]
RHOM_13750  citrate synthase [KO:K01647] [EC:2.3.3.1]
RHOM_15225  citrate synthase [KO:K01647] [EC:2.3.3.1]
RHOM_07875  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
RHOM_15890  putative hydratase [KO:K01681] [EC:4.2.1.3]
RHOM_07865  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RHOM_00065  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
RHOM_00070  fumarate hydratase subunit B [KO:K01678] [EC:4.2.1.2]
RHOM_10160  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
RHOM_00305  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
RHOM_00310  pyruvate/ketoisovalerate oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
RHOM_04835  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rho00010  Glycolysis / Gluconeogenesis
rho00053  Ascorbate and aldarate metabolism
rho00061  Fatty acid biosynthesis
rho00071  Fatty acid degradation
rho00190  Oxidative phosphorylation
rho00220  Arginine biosynthesis
rho00250  Alanine, aspartate and glutamate metabolism
rho00280  Valine, leucine and isoleucine degradation
rho00350  Tyrosine metabolism
rho00470  D-Amino acid metabolism
rho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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