KEGG   PATHWAY: rhp03030
Entry
rhp03030                    Pathway                                
Name
DNA replication - Rhodobacter sp. LPB0142
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rhp03030  DNA replication
rhp03030

Organism
Rhodobacter sp. LPB0142 [GN:rhp]
Gene
LPB142_11670  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LPB142_01135  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LPB142_04445  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LPB142_14810  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LPB142_12775  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LPB142_01920  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LPB142_10185  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LPB142_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LPB142_10365  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
LPB142_13465  DNA primase [KO:K02316] [EC:2.7.7.101]
LPB142_17550  single-stranded DNA-binding protein [KO:K03111]
LPB142_09485  single-stranded DNA-binding protein [KO:K03111]
LPB142_17845  single-stranded DNA-binding protein [KO:K03111]
LPB142_18025  single-stranded DNA-binding protein [KO:K03111]
LPB142_11955  hypothetical protein [KO:K03469] [EC:3.1.26.4]
LPB142_14170  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
LPB142_01525  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
LPB142_15055  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LPB142_10065  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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