KEGG   PATHWAY: rlac00020
Entry
rlac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodomicrobium lacus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlac00020  Citrate cycle (TCA cycle)
rlac00020

Module
rlac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rlac00020]
rlac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rlac00020]
rlac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rlac00020]
rlac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rlac00020]
rlac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rlac00020]
Other DBs
GO: 0006099
Organism
Rhodomicrobium lacus [GN:rlac]
Gene
QMO75_08810  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QMO75_00505  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QMO75_14855  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QMO75_14860  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QMO75_05730  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QMO75_05725  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QMO75_02815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMO75_05720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMO75_05735  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QMO75_05740  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QMO75_04325  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QMO75_06815  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QMO75_07495  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QMO75_06805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QMO75_06810  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QMO75_10955  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
QMO75_10950  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
QMO75_10945  fumarate reductase subunit C [KO:K00246]
QMO75_10940  frdD; fumarate reductase subunit FrdD [KO:K00247]
QMO75_14845  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QMO75_05745  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QMO75_07905  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QMO75_02790  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QMO75_02800  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QMO75_02810  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rlac00010  Glycolysis / Gluconeogenesis
rlac00053  Ascorbate and aldarate metabolism
rlac00061  Fatty acid biosynthesis
rlac00071  Fatty acid degradation
rlac00190  Oxidative phosphorylation
rlac00220  Arginine biosynthesis
rlac00250  Alanine, aspartate and glutamate metabolism
rlac00280  Valine, leucine and isoleucine degradation
rlac00350  Tyrosine metabolism
rlac00470  D-Amino acid metabolism
rlac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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