KEGG   PATHWAY: rls00020
Entry
rls00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium lusitanum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rls00020  Citrate cycle (TCA cycle)
rls00020

Module
rls_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rls00020]
rls_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rls00020]
rls_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rls00020]
rls_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rls00020]
Other DBs
GO: 0006099
Organism
Rhizobium lusitanum [GN:rls]
Gene
HB780_15330  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HB780_15940  citrate synthase [KO:K01647] [EC:2.3.3.1]
HB780_15945  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HB780_24065  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HB780_16570  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HB780_23795  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HB780_23785  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HB780_15385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HB780_23760  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HB780_23800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HB780_23810  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HB780_23835  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HB780_23830  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HB780_23845  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HB780_23840  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HB780_16875  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HB780_16870  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HB780_23815  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HB780_25215  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HB780_26015  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HB780_15365  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HB780_15370  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HB780_00905  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HB780_15375  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rls00010  Glycolysis / Gluconeogenesis
rls00053  Ascorbate and aldarate metabolism
rls00061  Fatty acid biosynthesis
rls00071  Fatty acid degradation
rls00190  Oxidative phosphorylation
rls00220  Arginine biosynthesis
rls00250  Alanine, aspartate and glutamate metabolism
rls00280  Valine, leucine and isoleucine degradation
rls00350  Tyrosine metabolism
rls00470  D-Amino acid metabolism
rls00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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