KEGG   PATHWAY: rlt00020
Entry
rlt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium leguminosarum bv. trifolii WSM2304
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlt00020  Citrate cycle (TCA cycle)
rlt00020

Module
rlt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rlt00020]
rlt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rlt00020]
rlt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rlt00020]
rlt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rlt00020]
Other DBs
GO: 0006099
Organism
Rhizobium leguminosarum bv. trifolii WSM2304 [GN:rlt]
Gene
Rleg2_1596  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rleg2_1829  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Rleg2_1830  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Rleg2_3738  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rleg2_1953  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Rleg2_3681  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Rleg2_3679  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Rleg2_3674  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg2_1608  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg2_4388  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg2_3682  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Rleg2_3684  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Rleg2_3690  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rleg2_3688  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Rleg2_3692  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rleg2_6119  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Rleg2_2018  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Rleg2_2016  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Rleg2_3685  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rleg2_3839  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Rleg2_6118  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Rleg2_3970  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Rleg2_1603  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Rleg2_1604  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Rleg2_1605  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rlt00010  Glycolysis / Gluconeogenesis
rlt00053  Ascorbate and aldarate metabolism
rlt00061  Fatty acid biosynthesis
rlt00071  Fatty acid degradation
rlt00190  Oxidative phosphorylation
rlt00220  Arginine biosynthesis
rlt00250  Alanine, aspartate and glutamate metabolism
rlt00280  Valine, leucine and isoleucine degradation
rlt00350  Tyrosine metabolism
rlt00470  D-Amino acid metabolism
rlt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system