KEGG   PATHWAY: rok00020
Entry
rok00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseovarius sp. AK1035
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rok00020  Citrate cycle (TCA cycle)
rok00020

Module
rok_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rok00020]
rok_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rok00020]
rok_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rok00020]
rok_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rok00020]
rok_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rok00020]
Other DBs
GO: 0006099
Organism
Roseovarius sp. AK1035 [GN:rok]
Gene
RAK1035_3376  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
RAK1035_3660  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RAK1035_1450  Isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
RAK1035_0669  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RAK1035_0668  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
RAK1035_3780  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RAK1035_0666  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
RAK1035_0670  Succinyl-CoA ligase, ADP-forming alpha chain [KO:K01902] [EC:6.2.1.5]
RAK1035_3886  Succinyl-CoA ligase, ADP-forming alpha chain [KO:K01902] [EC:6.2.1.5]
RAK1035_3889  Succinyl-CoA ligase, ADP-forming alpha chain [KO:K01902] [EC:6.2.1.5]
RAK1035_0671  Succinyl-CoA ligase, ADP-forming beta chain [KO:K01903] [EC:6.2.1.5]
RAK1035_3885  Succinyl-CoA ligase, ADP-forming beta chain [KO:K01903] [EC:6.2.1.5]
RAK1035_0843  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RAK1035_0841  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
RAK1035_0845  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
RAK1035_0844  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
RAK1035_1141  Succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
RAK1035_1138  Succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
RAK1035_1139  Succinate dehydrogenase hydrophobic anchor protein [KO:K00246]
RAK1035_1140  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00247]
RAK1035_2917  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
RAK1035_0673  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RAK1035_3695  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RAK1035_2125  Phosphoenolpyruvate carboxykinase, ATP [KO:K01610] [EC:4.1.1.49]
RAK1035_2348  Phosphoenolpyruvate carboxykinase, ATP [KO:K01610] [EC:4.1.1.49]
RAK1035_2330  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
RAK1035_2331  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
RAK1035_2332  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rok00010  Glycolysis / Gluconeogenesis
rok00053  Ascorbate and aldarate metabolism
rok00061  Fatty acid biosynthesis
rok00071  Fatty acid degradation
rok00190  Oxidative phosphorylation
rok00220  Arginine biosynthesis
rok00250  Alanine, aspartate and glutamate metabolism
rok00280  Valine, leucine and isoleucine degradation
rok00350  Tyrosine metabolism
rok00470  D-Amino acid metabolism
rok00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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