KEGG   PATHWAY: ros00020
Entry
ros00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseomonas sp. FDAARGOS_362
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ros00020  Citrate cycle (TCA cycle)
ros00020

Module
ros_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ros00020]
ros_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ros00020]
ros_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ros00020]
ros_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ros00020]
ros_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ros00020]
Other DBs
GO: 0006099
Organism
Roseomonas sp. FDAARGOS_362 [GN:ros]
Gene
CTJ15_00115  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CTJ15_05415  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CTJ15_11465  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CTJ15_23160  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CTJ15_14715  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CTJ15_14710  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CTJ15_08435  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CTJ15_14665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CTJ15_14720  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CTJ15_14725  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CTJ15_14790  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CTJ15_14795  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CTJ15_14780  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CTJ15_14785  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CTJ15_23510  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CTJ15_00500  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CTJ15_14730  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CTJ15_19250  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CTJ15_08410  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CTJ15_08415  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CTJ15_08420  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ros00010  Glycolysis / Gluconeogenesis
ros00053  Ascorbate and aldarate metabolism
ros00061  Fatty acid biosynthesis
ros00071  Fatty acid degradation
ros00190  Oxidative phosphorylation
ros00220  Arginine biosynthesis
ros00250  Alanine, aspartate and glutamate metabolism
ros00280  Valine, leucine and isoleucine degradation
ros00350  Tyrosine metabolism
ros00470  D-Amino acid metabolism
ros00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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