KEGG   PATHWAY: rpm00020
Entry
rpm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pararhodospirillum photometricum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpm00020  Citrate cycle (TCA cycle)
rpm00020

Module
rpm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rpm00020]
rpm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rpm00020]
rpm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rpm00020]
rpm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rpm00020]
rpm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rpm00020]
Other DBs
GO: 0006099
Organism
Pararhodospirillum photometricum [GN:rpm]
Gene
RSPPHO_01184  Citrate synthase [KO:K01647] [EC:2.3.3.1]
RSPPHO_02006  prpC; 2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RSPPHO_02503  Aconitase [KO:K01681] [EC:4.2.1.3]
RSPPHO_02504  Aconitase [KO:K01681] [EC:4.2.1.3]
RSPPHO_01017  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
RSPPHO_01888  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RSPPHO_02122  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
RSPPHO_02123  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RSPPHO_02150  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RSPPHO_02557  2-oxoglutarate synthase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RSPPHO_02556  2-oxoglutarate synthase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RSPPHO_02648  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
RSPPHO_02649  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
RSPPHO_01082  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
RSPPHO_02511  Succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
RSPPHO_02510  Succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
RSPPHO_02513  Succinate dehydrogenase subunit C [KO:K00241]
RSPPHO_02512  Succinate dehydrogenase subunit D [KO:K00242]
RSPPHO_02900  Fumarase [KO:K01676] [EC:4.2.1.2]
RSPPHO_02650  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RSPPHO_03092  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RSPPHO_00347  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
RSPPHO_00213  Pyruvate dehydrogenase (Lipoamide) [KO:K00161] [EC:1.2.4.1]
RSPPHO_00212  Pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
RSPPHO_02736  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rpm00010  Glycolysis / Gluconeogenesis
rpm00053  Ascorbate and aldarate metabolism
rpm00061  Fatty acid biosynthesis
rpm00071  Fatty acid degradation
rpm00190  Oxidative phosphorylation
rpm00220  Arginine biosynthesis
rpm00250  Alanine, aspartate and glutamate metabolism
rpm00280  Valine, leucine and isoleucine degradation
rpm00350  Tyrosine metabolism
rpm00470  D-Amino acid metabolism
rpm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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