KEGG   PATHWAY: rpt00630
Entry
rpt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodopseudomonas palustris TIE-1
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpt00630  Glyoxylate and dicarboxylate metabolism
rpt00630

Module
rpt_M00012  Glyoxylate cycle [PATH:rpt00630]
rpt_M00621  Glycine cleavage system [PATH:rpt00630]
rpt_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpt00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodopseudomonas palustris TIE-1 [GN:rpt]
Gene
Rpal_4878  isocitrate lyase and phosphorylmutase [KO:K01637] [EC:4.1.3.1]
Rpal_0209  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Rpal_2545  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpal_3934  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpal_4697  malate synthase G [KO:K01638] [EC:2.3.3.9]
Rpal_0187  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rpal_3253  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rpal_0199  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rpal_3607  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_0886  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_1903  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_4830  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_0532  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_2547  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_3956  Thiolase [KO:K00626] [EC:2.3.1.9]
Rpal_1956  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_4236  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpal_0533  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Rpal_3282  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding [KO:K01965] [EC:6.4.1.3]
Rpal_3618  carboxyl transferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Rpal_2039  methylmalonyl-CoA mutase, large subunit [KO:K01847] [EC:5.4.99.2]
Rpal_2041  Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Rpal_1321  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Rpal_1322  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Rpal_1323  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Rpal_3732  Catalase [KO:K03781] [EC:1.11.1.6]
Rpal_0426  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00015] [EC:1.1.1.26]
Rpal_2193  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Rpal_5122  Ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Rpal_1747  Ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Rpal_0263  RiBisCO-like protein [KO:K01601] [EC:4.1.1.39]
Rpal_1748  Ribulose-bisphosphate carboxylase [KO:K01602] [EC:4.1.1.39]
Rpal_0857  aminotransferase class V [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Rpal_1176  glutamine synthetase catalytic region [KO:K01915] [EC:6.3.1.2]
Rpal_3315  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Rpal_4690  Glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
Rpal_3135  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rpal_3004  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rpal_4375  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Rpal_4373  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Rpal_3205  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpal_0180  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpal_4374  glycine cleavage system H protein [KO:K02437]
Rpal_2000  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rpal_1942  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rpal_1526  bicupin, oxalate decarboxylase family [KO:K01569] [EC:4.1.1.2]
Rpal_0807  putative NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
Rpal_0805  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Rpal_0804  NADH dehydrogenase (quinone) [KO:K00124]
Rpal_0803  NADH dehydrogenase (ubiquinone) 24 kDa subunit [KO:K00127]
Rpal_2955  conserved hypothetical protein [KO:K01432] [EC:3.5.1.9]
Rpal_3396  conserved hypothetical protein [KO:K01432] [EC:3.5.1.9]
Rpal_4562  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Rpal_1448  Formamidase [KO:K01455] [EC:3.5.1.49]
Rpal_2134  Formamidase [KO:K01455] [EC:3.5.1.49]
Rpal_2155  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpt00010  Glycolysis / Gluconeogenesis
rpt00020  Citrate cycle (TCA cycle)
rpt00030  Pentose phosphate pathway
rpt00053  Ascorbate and aldarate metabolism
rpt00071  Fatty acid degradation
rpt00230  Purine metabolism
rpt00250  Alanine, aspartate and glutamate metabolism
rpt00260  Glycine, serine and threonine metabolism
rpt00620  Pyruvate metabolism
rpt00710  Carbon fixation by Calvin cycle
rpt00750  Vitamin B6 metabolism
rpt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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