KEGG   PATHWAY: rrg00630
Entry
rrg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium ruizarguesonis
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrg00630  Glyoxylate and dicarboxylate metabolism
rrg00630

Module
rrg_M00012  Glyoxylate cycle [PATH:rrg00630]
rrg_M00621  Glycine cleavage system [PATH:rrg00630]
rrg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rrg00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium ruizarguesonis [GN:rrg]
Gene
J3P73_04410  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
J3P73_22270  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
J3P73_24470  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J3P73_00275  malate synthase G [KO:K01638] [EC:2.3.3.9]
J3P73_22975  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J3P73_11475  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J3P73_12735  citrate synthase [KO:K01647] [EC:2.3.3.1]
J3P73_12740  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
J3P73_23430  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J3P73_03535  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J3P73_23870  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J3P73_25415  thiolase family protein [KO:K00626] [EC:2.3.1.9]
J3P73_32130  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
J3P73_23865  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
J3P73_09615  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
J3P73_12985  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
J3P73_13020  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
J3P73_34810  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
J3P73_32535  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
J3P73_04965  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J3P73_04970  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
J3P73_04975  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
J3P73_10710  catalase [KO:K03781] [EC:1.11.1.6]
J3P73_00980  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
J3P73_01200  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J3P73_27165  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J3P73_05165  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
J3P73_13035  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
J3P73_13735  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
J3P73_04370  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J3P73_08255  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J3P73_12190  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J3P73_17100  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J3P73_18305  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
J3P73_09060  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J3P73_13075  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
J3P73_13065  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
J3P73_30850  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
J3P73_30910  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
J3P73_11535  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J3P73_22925  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J3P73_32155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J3P73_13070  gcvH; glycine cleavage system protein GcvH [KO:K02437]
J3P73_19565  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
J3P73_19600  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
J3P73_33090  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
J3P73_19465  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
J3P73_19605  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
J3P73_33740  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
J3P73_10655  glycerate kinase [KO:K11529] [EC:2.7.1.165]
J3P73_27150  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
J3P73_21530  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
J3P73_22720  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
J3P73_22730  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
J3P73_22735  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
J3P73_22740  formate dehydrogenase subunit gamma [KO:K00127]
J3P73_01430  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J3P73_30915  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J3P73_33540  formamidase [KO:K01455] [EC:3.5.1.49]
J3P73_28945  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rrg00010  Glycolysis / Gluconeogenesis
rrg00020  Citrate cycle (TCA cycle)
rrg00030  Pentose phosphate pathway
rrg00053  Ascorbate and aldarate metabolism
rrg00071  Fatty acid degradation
rrg00230  Purine metabolism
rrg00250  Alanine, aspartate and glutamate metabolism
rrg00260  Glycine, serine and threonine metabolism
rrg00620  Pyruvate metabolism
rrg00710  Carbon fixation by Calvin cycle
rrg00750  Vitamin B6 metabolism
rrg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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