KEGG   PATHWAY: rrj00020
Entry
rrj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia rickettsii Iowa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrj00020  Citrate cycle (TCA cycle)
rrj00020

Module
rrj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rrj00020]
rrj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rrj00020]
rrj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rrj00020]
rrj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rrj00020]
Other DBs
GO: 0006099
Organism
Rickettsia rickettsii Iowa [GN:rrj]
Gene
RrIowa_1533  citrate synthase [KO:K01647] [EC:2.3.3.1]
RrIowa_1443  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RrIowa_0425  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
RrIowa_0282  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RrIowa_0280  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
RrIowa_0912  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RrIowa_1449  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RrIowa_0712  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
RrIowa_0713  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
RrIowa_0211  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RrIowa_0091  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
RrIowa_0209  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
RrIowa_0210  succinate dehydrogenase membrane anchor subunit [KO:K00242]
RrIowa_1204  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RrIowa_0618  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RrIowa_0418  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
RrIowa_0419  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
RrIowa_0826  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rrj00010  Glycolysis / Gluconeogenesis
rrj00061  Fatty acid biosynthesis
rrj00190  Oxidative phosphorylation
rrj00220  Arginine biosynthesis
rrj00250  Alanine, aspartate and glutamate metabolism
rrj00280  Valine, leucine and isoleucine degradation
rrj00350  Tyrosine metabolism
rrj00470  D-Amino acid metabolism
rrj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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