KEGG   PATHWAY: rrm00020
Entry
rrm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia rickettsii Morgan
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrm00020  Citrate cycle (TCA cycle)
rrm00020

Module
rrm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rrm00020]
rrm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rrm00020]
rrm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rrm00020]
rrm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rrm00020]
Other DBs
GO: 0006099
Organism
Rickettsia rickettsii Morgan [GN:rrm]
Gene
RRM_06730  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
RRM_06305  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RRM_01950  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RRM_01290  MFS transporter [KO:K00164] [EC:1.2.4.2]
RRM_01280  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
RRM_06335  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RRM_04105  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RRM_03215  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
RRM_03220  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RRM_00965  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
RRM_00445  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RRM_00950  succinate dehydrogenase [KO:K00241]
RRM_00960  succinate dehydrogenase [KO:K00242]
RRM_05275  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RRM_02805  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RRM_01915  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
RRM_01920  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
RRM_03705  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rrm00010  Glycolysis / Gluconeogenesis
rrm00061  Fatty acid biosynthesis
rrm00190  Oxidative phosphorylation
rrm00220  Arginine biosynthesis
rrm00250  Alanine, aspartate and glutamate metabolism
rrm00280  Valine, leucine and isoleucine degradation
rrm00350  Tyrosine metabolism
rrm00470  D-Amino acid metabolism
rrm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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