KEGG   PATHWAY: rry00010
Entry
rry00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Rathayibacter rathayi
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rry00010  Glycolysis / Gluconeogenesis
rry00010

Module
rry_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rry00010]
rry_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rry00010]
rry_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rry00010]
rry_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rry00010]
Other DBs
GO: 0006096 0006094
Organism
Rathayibacter rathayi [GN:rry]
Gene
C1O28_04800  glucokinase [KO:K25026] [EC:2.7.1.2]
C1O28_05615  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
C1O28_00690  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
C1O28_10555  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
C1O28_08605  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
C1O28_08610  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
C1O28_05585  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
C1O28_05575  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
C1O28_05580  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
C1O28_02515  phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
C1O28_03265  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
C1O28_05445  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
C1O28_07085  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C1O28_06125  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
C1O28_06120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1O28_12900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1O28_02345  NAD(P)-dependent alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
C1O28_09775  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C1O28_12925  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C1O28_13950  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
C1O28_02370  aldose epimerase [KO:K01785] [EC:5.1.3.3]
C1O28_01305  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
C1O28_06200  ROK family protein [KO:K00886] [EC:2.7.1.63]
C1O28_03135  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rry00020  Citrate cycle (TCA cycle)
rry00030  Pentose phosphate pathway
rry00500  Starch and sucrose metabolism
rry00620  Pyruvate metabolism
rry00640  Propanoate metabolism
rry00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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