KEGG   PATHWAY: rsan00020
Entry
rsan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhipicephalus sanguineus (brown dog tick)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsan00020  Citrate cycle (TCA cycle)
rsan00020

Module
rsan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rsan00020]
rsan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rsan00020]
rsan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rsan00020]
rsan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rsan00020]
rsan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rsan00020]
Other DBs
GO: 0006099
Organism
Rhipicephalus sanguineus (brown dog tick) [GN:rsan]
Gene
119386823  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
119386505  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
119399812  LOW QUALITY PROTEIN: probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119394543  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
119384952  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119396786  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119373835  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119375370  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
119404773  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119396044  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119387168  LOW QUALITY PROTEIN: probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119404505  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119379182  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
119405266  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119390243  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
119374171  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119396532  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
119379232  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119396985  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119386568  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119384040  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119382603  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119400208  succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
119376727  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
119393228  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
119393476  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
119374506  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
119373224  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119373248  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119394797  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119394798  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119390244  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
119374271  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
119372366  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
119381595  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
119396225  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
119389767  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
119383166  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rsan00010  Glycolysis / Gluconeogenesis
rsan00053  Ascorbate and aldarate metabolism
rsan00061  Fatty acid biosynthesis
rsan00062  Fatty acid elongation
rsan00071  Fatty acid degradation
rsan00190  Oxidative phosphorylation
rsan00220  Arginine biosynthesis
rsan00250  Alanine, aspartate and glutamate metabolism
rsan00280  Valine, leucine and isoleucine degradation
rsan00350  Tyrosine metabolism
rsan00470  D-Amino acid metabolism
rsan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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