KEGG   PATHWAY: rsz00630
Entry
rsz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Raphanus sativus (radish)
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsz00630  Glyoxylate and dicarboxylate metabolism
rsz00630

Module
rsz_M00012  Glyoxylate cycle [PATH:rsz00630]
rsz_M00532  Photorespiration [PATH:rsz00630]
rsz_M00621  Glycine cleavage system [PATH:rsz00630]
Other DBs
GO: 0046487 0043648
Organism
Raphanus sativus (radish) [GN:rsz]
Gene
108829373  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108860098  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
130496782  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
108849181  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
108834635  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108840348  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
108819428  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108828327  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108858754  malate dehydrogenase 1, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108858764  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108832452  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108828185  malate dehydrogenase 3, cytoplasmic [KO:K00025] [EC:1.1.1.37]
130505786  malate dehydrogenase 1, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108855905  malate dehydrogenase 1, peroxisomal [KO:K00026] [EC:1.1.1.37]
108818532  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108822930  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
108842356  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108813294  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108833761  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
108859076  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
108847754  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
108832326  citrate synthase 5, mitochondrial [KO:K01647] [EC:2.3.3.1]
108856156  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
108834711  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
108829978  citrate synthase 5, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
108848439  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
108858635  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
108851251  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
108851253  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
130494953  citrate synthase 5, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
108862400  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
108862421  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
108822765  aconitate hydratase 2, mitochondrial isoform X2 [KO:K01681] [EC:4.2.1.3]
108849991  aconitate hydratase 2, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
108835186  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
108820637  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
130505952  aconitate hydratase 2, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
130508283  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
108823522  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
108828420  acetyl-CoA acetyltransferase 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
108855381  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
108812888  peroxisomal (S)-2-hydroxyacid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
108835960  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
108835798  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
108857146  peroxisomal (S)-2-hydroxyacid oxidase GLO3 [KO:K11517] [EC:1.1.3.15]
108805776  glycolate oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
108849817  glycolate oxidase 3 [KO:K11517] [EC:1.1.3.15]
108856778  glycolate oxidase 2 [KO:K11517] [EC:1.1.3.15]
108863187  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
108863188  glycolate oxidase 2 [KO:K11517] [EC:1.1.3.15]
108835799  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
130500717  glycolate oxidase 2 [KO:K11517] [EC:1.1.3.15]
130510476  glycolate oxidase 3 [KO:K11517] [EC:1.1.3.15]
108829316  catalase-3 [KO:K03781] [EC:1.11.1.6]
108829317  catalase-1 [KO:K03781] [EC:1.11.1.6]
108806911  LOW QUALITY PROTEIN: catalase-3 [KO:K03781] [EC:1.11.1.6]
108806920  catalase-1 [KO:K03781] [EC:1.11.1.6]
108822519  catalase-3 [KO:K03781] [EC:1.11.1.6]
108840848  catalase-2 [KO:K03781] [EC:1.11.1.6]
108818743  catalase-2 [KO:K03781] [EC:1.11.1.6]
108848408  catalase-2 [KO:K03781] [EC:1.11.1.6]
130498888  catalase-3 [KO:K03781] [EC:1.11.1.6]
130504261  catalase-2-like [KO:K03781] [EC:1.11.1.6]
130511857  catalase-1-like [KO:K03781] [EC:1.11.1.6]
130511869  catalase-2 [KO:K03781] [EC:1.11.1.6]
108811885  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108818087  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108853013  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108857162  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108828336  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108835198  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108827314  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
108814122  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
130499974  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
108821596  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
108854197  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
19816359  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
108854277  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108854278  ribulose bisphosphate carboxylase small subunit, chloroplastic 2 isoform X1 [KO:K01602] [EC:4.1.1.39]
108830969  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
108829688  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
108840710  ribulose bisphosphate carboxylase small subunit 1A, chloroplastic [KO:K01602] [EC:4.1.1.39]
108848825  ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like [KO:K01602] [EC:4.1.1.39]
108840532  ribulose bisphosphate carboxylase small subunit 1B, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108863586  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108825810  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108822099  glutamate--glyoxylate aminotransferase 1 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108822100  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108825821  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108808579  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108817709  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial [KO:K00284] [EC:1.4.7.1]
108854286  ferredoxin-dependent glutamate synthase 2, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
108843504  glutamine synthetase cytosolic isozyme 1-2 isoform X1 [KO:K01915] [EC:6.3.1.2]
108805220  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
108828973  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
108842667  glutamine synthetase cytosolic isozyme 1-4 [KO:K01915] [EC:6.3.1.2]
108854859  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
108822969  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
108814463  glutamine synthetase cytosolic isozyme 1-4 [KO:K01915] [EC:6.3.1.2]
108851757  glutamine synthetase cytosolic isozyme 1-5 [KO:K01915] [EC:6.3.1.2]
108838761  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
108856566  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
130497068  glutamine synthetase cytosolic isozyme 1-3-like [KO:K01915] [EC:6.3.1.2]
130503950  glutamine synthetase cytosolic isozyme 1-3-like [KO:K01915] [EC:6.3.1.2]
130512586  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
108822712  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
108854898  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
108811258  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
108816969  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
108822376  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
108827826  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
108822648  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
108841422  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
108818971  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
108842752  LOW QUALITY PROTEIN: serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
130497791  serine hydroxymethyltransferase 2, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
130497920  serine hydroxymethyltransferase 2, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
130500811  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
130494719  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
130506551  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
130507820  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
130508325  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
108842181  LOW QUALITY PROTEIN: glycine dehydrogenase (decarboxylating) 1, mitochondrial [KO:K00281] [EC:1.4.4.2]
108829191  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
108820625  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
130504090  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
108816294  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
108863067  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
108835178  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
108805246  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
130502647  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
108823102  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
108856728  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
108850937  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
108813838  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
108854548  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
108813441  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
108823440  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
108817570  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
108836042  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
108818206  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
108861500  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
108840317  formate dehydrogenase, chloroplastic/mitochondrial-like [KO:K00122] [EC:1.17.1.9]
108822589  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
108855694  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
108843395  uncharacterized protein LOC108843395 [KO:K01455] [EC:3.5.1.49]
108843396  LOW QUALITY PROTEIN: uncharacterized protein LOC108843396 [KO:K01455] [EC:3.5.1.49]
130508332  uncharacterized protein LOC130508332 isoform X1 [KO:K01455] [EC:3.5.1.49]
108813239  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rsz00010  Glycolysis / Gluconeogenesis
rsz00020  Citrate cycle (TCA cycle)
rsz00030  Pentose phosphate pathway
rsz00053  Ascorbate and aldarate metabolism
rsz00071  Fatty acid degradation
rsz00230  Purine metabolism
rsz00250  Alanine, aspartate and glutamate metabolism
rsz00260  Glycine, serine and threonine metabolism
rsz00620  Pyruvate metabolism
rsz00710  Carbon fixation by Calvin cycle
rsz00750  Vitamin B6 metabolism
rsz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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