KEGG   PATHWAY: rter00020
Entry
rter00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rothia terrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rter00020  Citrate cycle (TCA cycle)
rter00020

Module
rter_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rter00020]
rter_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rter00020]
rter_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rter00020]
rter_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rter00020]
rter_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rter00020]
Other DBs
GO: 0006099
Organism
Rothia terrae [GN:rter]
Gene
IDM49_03975  citrate synthase [KO:K01647] [EC:2.3.3.1]
IDM49_07210  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IDM49_03875  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IDM49_04505  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IDM49_07375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IDM49_02200  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IDM49_02195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IDM49_09185  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IDM49_10625  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IDM49_09180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IDM49_10620  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IDM49_09195  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IDM49_10630  succinate dehydrogenase cytochrome b subunit [KO:K00241]
IDM49_09190  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
IDM49_09030  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IDM49_07340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IDM49_04820  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IDM49_07645  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IDM49_09900  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IDM49_05200  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IDM49_07380  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rter00010  Glycolysis / Gluconeogenesis
rter00061  Fatty acid biosynthesis
rter00071  Fatty acid degradation
rter00190  Oxidative phosphorylation
rter00220  Arginine biosynthesis
rter00250  Alanine, aspartate and glutamate metabolism
rter00280  Valine, leucine and isoleucine degradation
rter00350  Tyrosine metabolism
rter00470  D-Amino acid metabolism
rter00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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