KEGG   PATHWAY: rvl00020
Entry
rvl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhododendron vialii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rvl00020  Citrate cycle (TCA cycle)
rvl00020

Module
rvl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rvl00020]
rvl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rvl00020]
rvl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rvl00020]
Other DBs
GO: 0006099
Organism
Rhododendron vialii [GN:rvl]
Gene
131334251  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
131329945  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
131321821  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
131308685  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
131310236  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
131310825  ATP-citrate synthase alpha chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
131315920  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
131322390  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
131330488  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
131330647  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
131302691  isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
131298319  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
131298858  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
131302637  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
131324736  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
131325539  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
131325751  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
131299083  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
131302044  uncharacterized protein LOC131302044 [KO:K00164] [EC:1.2.4.2]
131319128  uncharacterized protein LOC131319128 isoform X1 [KO:K00164] [EC:1.2.4.2]
131300011  uncharacterized protein LOC131300011 [KO:K00164] [EC:1.2.4.2]
131323290  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
131330507  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
131322272  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
131325634  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131316395  dihydrolipoyl dehydrogenase 2, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131300590  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
131313628  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131336714  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
131302458  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
131299014  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
131315045  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
131330670  fumarate hydratase 1, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
131330709  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
131332305  fumarate hydratase 1, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
131315513  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
131331767  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
131331768  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
131304207  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
131307258  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
131323386  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131325985  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
131331547  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131303338  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131329042  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131307660  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131310129  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
131310329  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
131316028  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131335227  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
131311997  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
131312290  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
131301714  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
131319472  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
131335638  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
131307444  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rvl00010  Glycolysis / Gluconeogenesis
rvl00053  Ascorbate and aldarate metabolism
rvl00061  Fatty acid biosynthesis
rvl00062  Fatty acid elongation
rvl00071  Fatty acid degradation
rvl00190  Oxidative phosphorylation
rvl00220  Arginine biosynthesis
rvl00250  Alanine, aspartate and glutamate metabolism
rvl00280  Valine, leucine and isoleucine degradation
rvl00350  Tyrosine metabolism
rvl00470  D-Amino acid metabolism
rvl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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