KEGG   PATHWAY: rze00020
Entry
rze00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhagoletis zephyria (snowberry fruit fly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rze00020  Citrate cycle (TCA cycle)
rze00020

Module
rze_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rze00020]
rze_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rze00020]
rze_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rze00020]
rze_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rze00020]
rze_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rze00020]
Other DBs
GO: 0006099
Organism
Rhagoletis zephyria (snowberry fruit fly) [GN:rze]
Gene
108359922  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108364246  citrate synthase-like [KO:K01647] [EC:2.3.3.1]
108367319  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108367673  LOW QUALITY PROTEIN: aconitate hydratase A-like [KO:K01681] [EC:4.2.1.3]
108369364  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
108365122  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
108358546  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108377726  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
108377728  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
108378806  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
108380227  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
108366884  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108376050  probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108378065  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108371970  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108363174  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108373216  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108377908  2-oxoglutarate dehydrogenase E1 component-like [KO:K00164] [EC:1.2.4.2]
108365435  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108366024  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
108362318  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108375054  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108369937  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108361883  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108358536  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108371568  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108382002  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108363794  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108377866  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
108364711  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108364712  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
108376258  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
108360108  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
108362890  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
108368667  succinate dehydrogenase cytochrome B subunit, mitochondrial-like [KO:K00236]
108370940  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
108363195  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108370724  succinate dehydrogenase iron-sulfur subunit-like [KO:K00240] [EC:1.3.5.1]
108360277  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
108382054  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108374068  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108378326  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108371031  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108371296  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108371473  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108366201  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108379644  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
108360530  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
108359846  LOW QUALITY PROTEIN: phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
108373195  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
108379514  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108380795  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108361538  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108361546  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
108367676  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
108377958  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
108382405  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
108365191  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
108373179  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rze00010  Glycolysis / Gluconeogenesis
rze00053  Ascorbate and aldarate metabolism
rze00061  Fatty acid biosynthesis
rze00062  Fatty acid elongation
rze00071  Fatty acid degradation
rze00190  Oxidative phosphorylation
rze00220  Arginine biosynthesis
rze00250  Alanine, aspartate and glutamate metabolism
rze00280  Valine, leucine and isoleucine degradation
rze00350  Tyrosine metabolism
rze00470  D-Amino acid metabolism
rze00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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