KEGG   PATHWAY: sacc00020
Entry
sacc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharomonospora xinjiangensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sacc00020  Citrate cycle (TCA cycle)
sacc00020

Module
sacc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sacc00020]
sacc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sacc00020]
sacc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sacc00020]
sacc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sacc00020]
sacc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sacc00020]
Other DBs
GO: 0006099
Organism
Saccharomonospora xinjiangensis [GN:sacc]
Gene
EYD13_18680  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
EYD13_18720  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
EYD13_12480  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EYD13_02835  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
EYD13_16965  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EYD13_05730  pdhD1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYD13_06045  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYD13_11790  pdhD2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYD13_01895  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EYD13_01890  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EYD13_02760  sucD1; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
EYD13_02755  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
EYD13_03015  sdhA1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EYD13_15195  sdhA2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EYD13_03010  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EYD13_15190  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EYD13_03025  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
EYD13_03020  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
EYD13_13645  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
EYD13_17485  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EYD13_10570  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EYD13_05035  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
EYD13_21645  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
EYD13_05605  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EYD13_07855  acoA1; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
EYD13_11795  acoA2; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
EYD13_07850  bfmBAB1; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EYD13_11800  bfmBAB2; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EYD13_07840  pdhC1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
EYD13_11805  pdhC2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
EYD13_05725  dlaT; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sacc00010  Glycolysis / Gluconeogenesis
sacc00053  Ascorbate and aldarate metabolism
sacc00061  Fatty acid biosynthesis
sacc00071  Fatty acid degradation
sacc00190  Oxidative phosphorylation
sacc00220  Arginine biosynthesis
sacc00250  Alanine, aspartate and glutamate metabolism
sacc00280  Valine, leucine and isoleucine degradation
sacc00350  Tyrosine metabolism
sacc00470  D-Amino acid metabolism
sacc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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