KEGG   PATHWAY: sajs00020
Entry
sajs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salinicola sp. JS01
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sajs00020  Citrate cycle (TCA cycle)
sajs00020

Module
sajs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sajs00020]
sajs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sajs00020]
sajs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sajs00020]
sajs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sajs00020]
Other DBs
GO: 0006099
Organism
Salinicola sp. JS01 [GN:sajs]
Gene
QO259_15185  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
QO259_11640  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QO259_14550  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QO259_09345  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QO259_04675  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QO259_17550  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
QO259_01065  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
QO259_11615  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QO259_11610  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QO259_11605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QO259_11595  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QO259_11600  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QO259_11625  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QO259_11620  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QO259_11635  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QO259_11630  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QO259_08235  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QO259_09550  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QO259_16450  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QO259_07300  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
QO259_07305  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
QO259_04040  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QO259_12200  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QO259_12195  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sajs00010  Glycolysis / Gluconeogenesis
sajs00053  Ascorbate and aldarate metabolism
sajs00061  Fatty acid biosynthesis
sajs00071  Fatty acid degradation
sajs00190  Oxidative phosphorylation
sajs00220  Arginine biosynthesis
sajs00250  Alanine, aspartate and glutamate metabolism
sajs00280  Valine, leucine and isoleucine degradation
sajs00350  Tyrosine metabolism
sajs00470  D-Amino acid metabolism
sajs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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