KEGG   PATHWAY: salm03430
Entry
salm03430                   Pathway                                
Name
Mismatch repair - Salinimonas sediminis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
salm03430  Mismatch repair
salm03430

Other DBs
GO: 0006298
Organism
Salinimonas sediminis [GN:salm]
Gene
D0Y50_04000  mutS; DNA mismatch repair protein MutS [KO:K03555]
D0Y50_17655  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
D0Y50_02420  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
D0Y50_18440  DNA helicase II [KO:K03657] [EC:5.6.2.4]
D0Y50_07730  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
D0Y50_13475  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
D0Y50_12975  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
D0Y50_03120  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
D0Y50_18275  ssb; single-stranded DNA-binding protein [KO:K03111]
D0Y50_04425  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D0Y50_19400  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D0Y50_08620  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D0Y50_07975  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D0Y50_07795  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D0Y50_16420  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
D0Y50_00855  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D0Y50_05265  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D0Y50_15290  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D0Y50_08840  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
D0Y50_18075  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
D0Y50_01685  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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