KEGG   PATHWAY: salp00020
Entry
salp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salvelinus sp. IW2-2015 (Arctic char)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
salp00020  Citrate cycle (TCA cycle)
salp00020

Module
salp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:salp00020]
salp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:salp00020]
salp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:salp00020]
salp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:salp00020]
Other DBs
GO: 0006099
Organism
Salvelinus sp. IW2-2015 (Arctic char) [GN:salp]
Gene
111970231  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111976366  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111966711  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111967637  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
112068732  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
111972845  LOW QUALITY PROTEIN: ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
111977741  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
112069944  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
112080051  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111967901  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
111954341  aco1; LOW QUALITY PROTEIN: cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
112072163  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111960185  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111953090  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
111962433  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
112070136  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
111976757  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
112077144  idh3a; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
111966818  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111976766  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111962559  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111975144  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
111963793  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112080392  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
112074912  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
112069409  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
111963268  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
111968739  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
111971987  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111962178  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111971559  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
112080656  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111977889  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111959480  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111969936  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111968514  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112068963  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
111954921  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
111955807  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111970045  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
111967344  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
111976377  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
111979797  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
111975097  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
111960034  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
111949365  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
112078627  fh; LOW QUALITY PROTEIN: fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
112076948  LOW QUALITY PROTEIN: malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111959442  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
111950629  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111981395  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111964167  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
111950242  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
111972759  phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
111961621  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
111953319  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
111950366  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
112072134  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111973256  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
111964305  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
112074120  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
salp00010  Glycolysis / Gluconeogenesis
salp00053  Ascorbate and aldarate metabolism
salp00061  Fatty acid biosynthesis
salp00062  Fatty acid elongation
salp00071  Fatty acid degradation
salp00190  Oxidative phosphorylation
salp00220  Arginine biosynthesis
salp00250  Alanine, aspartate and glutamate metabolism
salp00280  Valine, leucine and isoleucine degradation
salp00350  Tyrosine metabolism
salp00470  D-Amino acid metabolism
salp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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