KEGG   PATHWAY: sanh00020
Entry
sanh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sinocyclocheilus anshuiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sanh00020  Citrate cycle (TCA cycle)
sanh00020

Module
sanh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sanh00020]
sanh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sanh00020]
sanh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sanh00020]
sanh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sanh00020]
sanh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sanh00020]
Other DBs
GO: 0006099
Organism
Sinocyclocheilus anshuiensis [GN:sanh]
Gene
107697968  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107671863  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
107674696  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
107687019  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
107690323  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
107691833  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
107692062  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107663183  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107675411  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
107690390  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
107663883  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
107691122  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
107698523  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
107673097  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107698363  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107671940  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107692319  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107659502  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107687466  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107661324  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107658646  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107702872  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
107656768  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
107691557  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
107683740  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
107678142  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107702243  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107698255  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107659488  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107674246  succinyl-CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107664570  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107699794  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107677548  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107656059  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107659994  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107694085  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107694775  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
107673094  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107687435  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107656920  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
107692898  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107660397  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107657257  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
107670952  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
107681256  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like isoform X1 [KO:K00237]
107688033  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
107659661  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107670837  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107654903  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107684302  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107675721  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107691667  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
107686142  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107669309  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107699965  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107661964  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107661088  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107657833  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
107703124  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
107691411  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
107663644  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107682929  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107687697  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107672749  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
107666611  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107658396  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107653173  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107703522  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107681164  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sanh00010  Glycolysis / Gluconeogenesis
sanh00053  Ascorbate and aldarate metabolism
sanh00061  Fatty acid biosynthesis
sanh00062  Fatty acid elongation
sanh00071  Fatty acid degradation
sanh00190  Oxidative phosphorylation
sanh00220  Arginine biosynthesis
sanh00250  Alanine, aspartate and glutamate metabolism
sanh00280  Valine, leucine and isoleucine degradation
sanh00350  Tyrosine metabolism
sanh00470  D-Amino acid metabolism
sanh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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