KEGG   PATHWAY: saq00020
Entry
saq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salinispora arenicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saq00020  Citrate cycle (TCA cycle)
saq00020

Module
saq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:saq00020]
saq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:saq00020]
saq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saq00020]
saq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:saq00020]
saq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saq00020]
Other DBs
GO: 0006099
Organism
Salinispora arenicola [GN:saq]
Gene
Sare_2284  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Sare_0511  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Sare_3289  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Sare_4173  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sare_4070  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Sare_3551  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sare_0646  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sare_0645  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sare_4202  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sare_4203  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Sare_4150  Succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Sare_1706  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sare_4151  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Sare_1705  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Sare_1707  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Sare_4675  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Sare_4674  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Sare_4174  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sare_0807  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Sare_1114  Transketolase domain protein [KO:K00163] [EC:1.2.4.1]
Sare_3613  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Sare_3552  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saq00010  Glycolysis / Gluconeogenesis
saq00053  Ascorbate and aldarate metabolism
saq00061  Fatty acid biosynthesis
saq00071  Fatty acid degradation
saq00190  Oxidative phosphorylation
saq00220  Arginine biosynthesis
saq00250  Alanine, aspartate and glutamate metabolism
saq00280  Valine, leucine and isoleucine degradation
saq00350  Tyrosine metabolism
saq00470  D-Amino acid metabolism
saq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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