KEGG   PATHWAY: sasa00020
Entry
sasa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmo salar (Atlantic salmon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sasa00020  Citrate cycle (TCA cycle)
sasa00020

Module
sasa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sasa00020]
sasa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sasa00020]
sasa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sasa00020]
sasa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sasa00020]
sasa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sasa00020]
Other DBs
GO: 0006099
Organism
Salmo salar (Atlantic salmon) [GN:sasa]
Gene
100136543  pck2; phosphoenolpyruvate carboxykinase 2 (mitochondrial) [KO:K01596] [EC:4.1.1.32]
100194530  sdha; succinate dehydrogenase complex, subunit A, flavoprotein (Fp) [KO:K00234] [EC:1.3.5.1]
100194639  idhp; isocitrate dehydrogenase 2-1 (NADP+), mitochondrial [KO:K00031] [EC:1.1.1.42]
100194640  [KO:K00031] [EC:1.1.1.42]
100194641  MDHM; malate dehydrogenase 2-2, NAD (mitochondrial) [KO:K00026] [EC:1.1.1.37]
100195201  aco1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
100195420  pck1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
100196665  sdhb; succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [KO:K00235] [EC:1.3.5.1]
100196673  MDHM; malate dehydrogenase 2-1, NAD (mitochondrial) [KO:K00026] [EC:1.1.1.37]
106561021  DLDH; dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
106563498  [KO:K01958] [EC:6.4.1.1]
106563586  ODPA; pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
106563967  [KO:K00627] [EC:2.3.1.12]
106564857  MDHC; malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106565197  [KO:K00030] [EC:1.1.1.41]
106565836  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106566255  ODPB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
106566856  [KO:K00235] [EC:1.3.5.1]
106567023  [KO:K00030] [EC:1.1.1.41]
106567176  [KO:K01647] [EC:2.3.3.1]
106569142  [KO:K00164] [EC:1.2.4.2]
106569582  C560; succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
106570380  [KO:K00234] [EC:1.3.5.1]
106571041  [KO:K00658] [EC:2.3.1.61]
106572524  [KO:K01647] [EC:2.3.3.1]
106572708  [KO:K00030] [EC:1.1.1.41]
106573004  [KO:K00030] [EC:1.1.1.41]
106573122  DHSA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
106577387  [KO:K00025] [EC:1.1.1.37]
106577388  mdh1b; malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106577413  [KO:K01679] [EC:4.2.1.2]
106579465  [KO:K00161] [EC:1.2.4.1]
106580202  [KO:K00164] [EC:1.2.4.2]
106580927  [KO:K00237]
106582245  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106582376  [KO:K00031] [EC:1.1.1.42]
106583035  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106583101  [KO:K00235] [EC:1.3.5.1]
106583348  [KO:K01647] [EC:2.3.3.1]
106583358  [KO:K00030] [EC:1.1.1.41]
106583814  pdhb; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
106584548  DLDH; dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
106585868  MDHC; malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106586335  [KO:K00031] [EC:1.1.1.42]
106586493  sucla2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106587025  [KO:K00164] [EC:1.2.4.2]
106589258  [KO:K01648] [EC:2.3.3.8]
106589533  [KO:K01681] [EC:4.2.1.3]
106590001  [KO:K00658] [EC:2.3.1.61]
106590260  pck2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
106590467  [KO:K00161] [EC:1.2.4.1]
106591218  [KO:K00031] [EC:1.1.1.42]
106593044  MDHC; malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106593429  [KO:K00162] [EC:1.2.4.1]
106595310  [KO:K00030] [EC:1.1.1.41]
106596468  [KO:K00025] [EC:1.1.1.37]
106600492  C560; succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
106601015  [KO:K01648] [EC:2.3.3.8]
106601239  [KO:K01681] [EC:4.2.1.3]
106602756  SUCA; succinyl-CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106603064  ODPA; pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
106603157  [KO:K01958] [EC:6.4.1.1]
106604067  dlat; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
106607160  [KO:K01681] [EC:4.2.1.3]
106607281  [KO:K01648] [EC:2.3.3.8]
106608299  [KO:K00658] [EC:2.3.1.61]
106609344  [KO:K01681] [EC:4.2.1.3]
106609699  idh3a; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
106610028  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106611056  dlst; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
106611092  [KO:K01679] [EC:4.2.1.2]
106612556  [KO:K00237]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sasa00010  Glycolysis / Gluconeogenesis
sasa00053  Ascorbate and aldarate metabolism
sasa00061  Fatty acid biosynthesis
sasa00062  Fatty acid elongation
sasa00071  Fatty acid degradation
sasa00190  Oxidative phosphorylation
sasa00220  Arginine biosynthesis
sasa00250  Alanine, aspartate and glutamate metabolism
sasa00280  Valine, leucine and isoleucine degradation
sasa00350  Tyrosine metabolism
sasa00470  D-Amino acid metabolism
sasa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system