KEGG   PATHWAY: sasa04744
Entry
sasa04744                   Pathway                                
Name
Phototransduction - Salmo salar (Atlantic salmon)
Description
Phototransduction is a biochemical process by which the photoreceptor cells generate electrical signals in response to captured photons. The vertebrate cascade starts with the absorption of photons by the photoreceptive pigments, the rhodopsins, which consist of a membrane embedded chromophore, 11-cis-retinal, and a G-protein-coupled receptor, opsin. The photon isomerizes 11-cis-retinal to all-trans-retinal which induces a structural change that activates the opsin. This triggers hydrolysis of cGMP by activating a transducinphosphodiesterase 6 (PDE6) cascade, which results in closure of the cGMP-gated cation channels (CNG) in the plasma membrane and membrane hyperpolarization. The hyperpolarization of the membrane potential of the photoreceptor cell modulates the release of neurotransmitters to downstream cells. Recovery from light involves the deactivation of the light- activated intermediates: photolyzed rhodopsin is phosphorylated by rhodopsin kinase (RK) and subsequently capped off by arrestin; GTP-binding transducin alpha subunit deactivates through a process that is stimulated by RGS9.
Class
Organismal Systems; Sensory system
Pathway map
sasa04744  Phototransduction
sasa04744

Other DBs
GO: 0009586
Organism
Salmo salar (Atlantic salmon) [GN:sasa]
Gene
106583538  green-sensitive opsin-2-like [KO:K04250]
106583539  green-sensitive opsin-3-like [KO:K04250]
106583540  green-sensitive opsin-like [KO:K04250]
100136370  rhod; rod opsin [KO:K04250]
100136369  rod-like opsin [KO:K04250]
100136942  RH2 opsin [KO:K04250]
106598174  grk7; G protein-coupled receptor kinase 7 [KO:K00909] [EC:2.7.11.14]
106612581  G-protein-coupled receptor kinase 7A-like [KO:K00909] [EC:2.7.11.14]
106568703  G-protein-coupled receptor kinase 7A-like [KO:K00909] [EC:2.7.11.14]
106574880  rhodopsin kinase-like [KO:K00909] [EC:2.7.11.14]
106580878  G-protein-coupled receptor kinase 7A-like [KO:K00909] [EC:2.7.11.14]
106594304  rhodopsin kinase-like [KO:K00909] [EC:2.7.11.14]
106586763  grk1; G protein-coupled receptor kinase 1 [KO:K00909] [EC:2.7.11.14]
106576996  recoverin-like [KO:K13764]
106605819  recoverin-like [KO:K13764]
106578857  recoverin-like [KO:K13764]
100196860  reco; Recoverin [KO:K13764]
106588288  visinin-like [KO:K13764]
106579793  S-arrestin-like [KO:K19627]
106565989  guanine nucleotide-binding protein G(t) subunit alpha-1 [KO:K04631]
106572857  guanine nucleotide-binding protein G(t) subunit alpha-2-like [KO:K04631]
106565670  guanine nucleotide-binding protein G(t) subunit alpha-2-like [KO:K04631]
106566369  guanine nucleotide-binding protein G(t) subunit alpha-2-like [KO:K04631]
106583073  guanine nucleotide-binding protein G(t) subunit alpha-2-like [KO:K04631]
106582761  guanine nucleotide-binding protein G(t) subunit alpha-like [KO:K04631]
106566880  GBB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [KO:K04536]
106571997  GBB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [KO:K04536]
106565997  guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [KO:K04536]
106582769  GBB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [KO:K04536]
106570493  guanine nucleotide-binding protein G(T) subunit gamma-T1-like [KO:K04548]
106588941  gng11; G protein subunit gamma 11 [KO:K04548]
106578908  regulator of G-protein signaling 9-like [KO:K13765]
106592109  regulator of G-protein signaling 9-like [KO:K13765]
106592915  regulator of G-protein signaling 9-like [KO:K13765]
106589442  rgs9; regulator of G-protein signaling 9 [KO:K13765]
106611924  pde6a; phosphodiesterase 6A [KO:K08718] [EC:3.1.4.35]
106563547  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta-like [KO:K13756] [EC:3.1.4.35]
106568151  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta-like [KO:K13756] [EC:3.1.4.35]
106611926  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma [KO:K13759]
106589281  retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like [KO:K13759]
100196812  cnrg; Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit gamma [KO:K13759]
106603596  retinal guanylyl cyclase 2-like [KO:K12321] [EC:4.6.1.2]
106567882  retinal guanylyl cyclase 2-like [KO:K12321] [EC:4.6.1.2]
106613073  retinal guanylyl cyclase 2-like [KO:K12322] [EC:4.6.1.2]
106563675  retinal guanylyl cyclase 2-like [KO:K12322] [EC:4.6.1.2]
106581277  retinal guanylyl cyclase 2-like [KO:K12322] [EC:4.6.1.2]
106602844  guanylyl cyclase-activating protein 1-like [KO:K08328]
106609403  guanylyl cyclase-activating protein 1-like [KO:K08328]
106572426  guanylyl cyclase-activating protein 2-like [KO:K08328]
106576353  guanylyl cyclase-activating protein 1-like [KO:K08328]
106562745  guanylyl cyclase-activating protein 2-like [KO:K08328]
106567350  guanylyl cyclase-activating protein 2-like [KO:K08328]
106581568  guanylyl cyclase-activating protein 1-like [KO:K08328]
106587889  guanylyl cyclase-activating protein 2-like [KO:K08328]
106587698  guanylyl cyclase-activating protein 2-like [KO:K08328]
106597363  guanylyl cyclase-activating protein 2-like [KO:K08328]
106593804  guanylyl cyclase-activating protein 2-like [KO:K08328]
106591450  guanylyl cyclase-activating protein 2-like [KO:K08328]
106562749  guanylyl cyclase-activating protein 2-like [KO:K08328]
106561848  sodium/potassium/calcium exchanger 1-like [KO:K13749]
106587958  sodium/potassium/calcium exchanger 1-like [KO:K13749]
106601272  CALM; calmodulin [KO:K02183]
106605143  CALM; calmodulin [KO:K02183]
106603160  calmodulin [KO:K02183]
106608223  CALM; calmodulin [KO:K02183]
106611171  calm1; calmodulin 1 [KO:K02183]
100195847  call4; Calmodulin-like protein 4 [KO:K02183]
106566003  calml6; calmodulin like 6 [KO:K02183]
106612378  CALM; calmodulin [KO:K02183]
106563500  CALM; calmodulin [KO:K02183]
106562770  calmodulin-like protein 4 [KO:K02183]
106560757  calml4; calmodulin like 4 [KO:K02183]
100194628  calm2; calmodulin 2 [KO:K02183]
100194629  CALM; calmodulin 2 (phosphorylase kinase, delta)-3 [KO:K02183]
106597685  calmodulin-like protein 4 [KO:K02183]
106597678  calmodulin-like protein 4 [KO:K02183]
106602752  cyclic nucleotide-gated channel rod photoreceptor subunit alpha-like [KO:K04948]
106608409  cnga1; cyclic nucleotide gated channel alpha 1 [KO:K04948]
106573206  cyclic nucleotide-gated cation channel beta-3-like [KO:K04952]
106561447  cyclic nucleotide-gated cation channel beta-1-like [KO:K04952]
106561912  cyclic nucleotide-gated cation channel beta-1-like [KO:K04952]
Compound
C00076  Calcium cation
C00144  GMP
C00238  Potassium cation
C00305  Magnesium cation
C00376  Retinal
C00942  3',5'-Cyclic GMP
C01330  Sodium cation
C02110  11-cis-Retinal
Reference
  Authors
Yau KW, Hardie RC
  Title
Phototransduction motifs and variations.
  Journal
Cell 139:246-64 (2009)
DOI:10.1016/j.cell.2009.09.029
Reference
  Authors
Koch KW, Duda T, Sharma RK
  Title
Photoreceptor specific guanylate cyclases in vertebrate phototransduction.
  Journal
Mol Cell Biochem 230:97-106 (2002)
Reference
PMID:9803480
  Authors
Jindrova H
  Title
Vertebrate phototransduction: activation, recovery, and adaptation.
  Journal
Physiol Res 47:155-68 (1998)
Reference
  Authors
Ebrey T, Koutalos Y
  Title
Vertebrate photoreceptors.
  Journal
Prog Retin Eye Res 20:49-94 (2001)
DOI:10.1016/S1350-9462(00)00014-8
Reference
  Authors
Pepe IM
  Title
Recent advances in our understanding of rhodopsin and phototransduction.
  Journal
Prog Retin Eye Res 20:733-59 (2001)
DOI:10.1016/S1350-9462(01)00013-1
Reference
  Authors
Kramer RH, Molokanova E
  Title
Modulation of cyclic-nucleotide-gated channels and regulation of vertebrate phototransduction.
  Journal
J Exp Biol 204:2921-31 (2001)
Reference
  Authors
Larhammar D, Nordstrom K, Larsson TA
  Title
Evolution of vertebrate rod and cone phototransduction genes.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:2867-80 (2009)
DOI:10.1098/rstb.2009.0077
Reference
  Authors
Dizhoor AM, Olshevskaya EV, Peshenko IV
  Title
Mg2+/Ca2+ cation binding cycle of guanylyl cyclase activating proteins (GCAPs): role in regulation of photoreceptor guanylyl cyclase.
  Journal
Mol Cell Biochem 334:117-24 (2010)
DOI:10.1007/s11010-009-0328-6
Reference
  Authors
Krizaj D, Copenhagen DR
  Title
Calcium regulation in photoreceptors.
  Journal
Front Biosci 7:d2023-44 (2002)
Reference
PMID:9893707
  Authors
Shichida Y, Imai H
  Title
Visual pigment: G-protein-coupled receptor for light signals.
  Journal
Cell Mol Life Sci 54:1299-315 (1998)
DOI:10.1007/s000180050256
Reference
PMID:9419388
  Authors
Pugh EN Jr, Duda T, Sitaramayya A, Sharma RK
  Title
Photoreceptor guanylate cyclases: a review.
  Journal
Biosci Rep 17:429-73 (1997)
DOI:10.1023/A:1027365520442
Reference
  Authors
Luo DG, Xue T, Yau KW
  Title
How vision begins: an odyssey.
  Journal
Proc Natl Acad Sci U S A 105:9855-62 (2008)
DOI:10.1073/pnas.0708405105
Reference
  Authors
Peshenko IV, Dizhoor AM
  Title
Activation and inhibition of photoreceptor guanylyl cyclase by guanylyl cyclase activating protein 1 (GCAP-1): the functional role of Mg2+/Ca2+ exchange in EF-hand domains.
  Journal
J Biol Chem 282:21645-52 (2007)
DOI:10.1074/jbc.M702368200
Reference
  Authors
Ridge KD, Abdulaev NG, Sousa M, Palczewski K
  Title
Phototransduction: crystal clear.
  Journal
Trends Biochem Sci 28:479-87 (2003)
DOI:10.1016/S0968-0004(03)00172-5
Related
pathway
sasa00830  Retinol metabolism
KO pathway
ko04744   
LinkDB

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