KEGG   PATHWAY: sata00020
Entry
sata00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces atratus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sata00020  Citrate cycle (TCA cycle)
sata00020

Module
sata_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sata00020]
sata_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sata00020]
sata_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sata00020]
sata_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sata00020]
Other DBs
GO: 0006099
Organism
Streptomyces atratus [GN:sata]
Gene
C5746_30950  citrate synthase [KO:K01647] [EC:2.3.3.1]
C5746_30955  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C5746_14765  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C5746_23650  citrate synthase [KO:K01647] [EC:2.3.3.1]
C5746_32160  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C5746_03425  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C5746_28020  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C5746_11920  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C5746_24410  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C5746_24405  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C5746_25375  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C5746_25370  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C5746_36960  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C5746_25545  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C5746_36965  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
C5746_25540  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C5746_36955  succinate dehydrogenase [KO:K00241]
C5746_25555  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C5746_25550  succinate dehydrogenase [KO:K00242]
C5746_26810  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C5746_26785  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C5746_25425  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C5746_26305  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C5746_11935  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C5746_13185  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sata00010  Glycolysis / Gluconeogenesis
sata00053  Ascorbate and aldarate metabolism
sata00061  Fatty acid biosynthesis
sata00071  Fatty acid degradation
sata00190  Oxidative phosphorylation
sata00220  Arginine biosynthesis
sata00250  Alanine, aspartate and glutamate metabolism
sata00280  Valine, leucine and isoleucine degradation
sata00350  Tyrosine metabolism
sata00470  D-Amino acid metabolism
sata00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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