KEGG   PATHWAY: sbd00020
Entry
sbd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobium baderi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbd00020  Citrate cycle (TCA cycle)
sbd00020

Module
sbd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbd00020]
sbd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbd00020]
sbd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbd00020]
sbd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbd00020]
sbd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbd00020]
Other DBs
GO: 0006099
Organism
Sphingobium baderi [GN:sbd]
Gene
ATN00_16690  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ATN00_10810  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ATN00_08535  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ATN00_19015  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
ATN00_19010  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ATN00_19005  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATN00_14280  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATN00_19020  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
ATN00_17840  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ATN00_14495  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ATN00_18220  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ATN00_19040  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ATN00_18230  succinate dehydrogenase [KO:K00241]
ATN00_18225  succinate dehydrogenase [KO:K00242]
ATN00_06375  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ATN00_16400  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ATN00_19025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ATN00_05750  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ATN00_15015  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ATN00_16170  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ATN00_16165  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ATN00_14290  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbd00010  Glycolysis / Gluconeogenesis
sbd00053  Ascorbate and aldarate metabolism
sbd00061  Fatty acid biosynthesis
sbd00071  Fatty acid degradation
sbd00190  Oxidative phosphorylation
sbd00220  Arginine biosynthesis
sbd00250  Alanine, aspartate and glutamate metabolism
sbd00280  Valine, leucine and isoleucine degradation
sbd00350  Tyrosine metabolism
sbd00470  D-Amino acid metabolism
sbd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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