KEGG   PATHWAY: sbia00020
Entry
sbia00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Syngnathoides biaculeatus (alligator pipefish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbia00020  Citrate cycle (TCA cycle)
sbia00020

Module
sbia_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbia00020]
sbia_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbia00020]
sbia_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbia00020]
sbia_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbia00020]
sbia_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbia00020]
Other DBs
GO: 0006099
Organism
Syngnathoides biaculeatus (alligator pipefish) [GN:sbia]
Gene
133510920  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
133495782  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
133514766  aclya; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
133495892  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
133514803  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
133494876  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
133502472  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
133511867  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
133502476  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
133505730  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
133507547  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
133514036  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
133509413  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
133498977  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
133512904  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
133511746  dldh; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
133506537  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
133512228  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
133507917  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
133500794  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
133507527  sdhb; LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
133511281  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
133504700  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
133503694  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
133510281  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
133506774  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
133500384  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
133494610  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
133492919  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
133507255  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
133491907  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
133492201  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
133492437  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
133507572  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
133492079  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbia00010  Glycolysis / Gluconeogenesis
sbia00053  Ascorbate and aldarate metabolism
sbia00061  Fatty acid biosynthesis
sbia00062  Fatty acid elongation
sbia00071  Fatty acid degradation
sbia00190  Oxidative phosphorylation
sbia00220  Arginine biosynthesis
sbia00250  Alanine, aspartate and glutamate metabolism
sbia00280  Valine, leucine and isoleucine degradation
sbia00350  Tyrosine metabolism
sbia00470  D-Amino acid metabolism
sbia00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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