KEGG   PATHWAY: scaq00020
Entry
scaq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus casei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scaq00020  Citrate cycle (TCA cycle)
scaq00020

Module
scaq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scaq00020]
scaq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scaq00020]
scaq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scaq00020]
scaq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scaq00020]
scaq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scaq00020]
Other DBs
GO: 0006099
Organism
Staphylococcus casei [GN:scaq]
Gene
QMO72_06085  citrate synthase [KO:K01647] [EC:2.3.3.1]
QMO72_07900  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QMO72_06090  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QMO72_07425  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QMO72_07430  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QMO72_06980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMO72_09145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMO72_08170  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QMO72_08165  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QMO72_08385  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QMO72_08390  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QMO72_08920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QMO72_08915  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QMO72_08925  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
QMO72_05095  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QMO72_10850  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QMO72_00235  lqo; L-lactate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMO72_01085  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMO72_02920  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMO72_09055  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QMO72_05330  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QMO72_09160  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QMO72_09155  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
QMO72_09150  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scaq00010  Glycolysis / Gluconeogenesis
scaq00053  Ascorbate and aldarate metabolism
scaq00061  Fatty acid biosynthesis
scaq00071  Fatty acid degradation
scaq00190  Oxidative phosphorylation
scaq00220  Arginine biosynthesis
scaq00250  Alanine, aspartate and glutamate metabolism
scaq00280  Valine, leucine and isoleucine degradation
scaq00350  Tyrosine metabolism
scaq00470  D-Amino acid metabolism
scaq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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