KEGG   PATHWAY: schr00020
Entry
schr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus chromogenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
schr00020  Citrate cycle (TCA cycle)
schr00020

Module
schr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:schr00020]
schr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:schr00020]
Other DBs
GO: 0006099
Organism
Staphylococcus chromogenes [GN:schr]
Gene
DWB92_07130  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DWB92_05670  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DWB92_06920  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DWB92_06925  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DWB92_06510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DWB92_08315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DWB92_07400  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DWB92_07395  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DWB92_07630  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DWB92_08100  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DWB92_08095  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DWB92_08105  succinate dehydrogenase [KO:K00241]
DWB92_04645  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DWB92_10400  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DWB92_02440  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DWB92_05245  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DWB92_08330  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DWB92_08325  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DWB92_08320  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
schr00010  Glycolysis / Gluconeogenesis
schr00053  Ascorbate and aldarate metabolism
schr00061  Fatty acid biosynthesis
schr00071  Fatty acid degradation
schr00190  Oxidative phosphorylation
schr00220  Arginine biosynthesis
schr00250  Alanine, aspartate and glutamate metabolism
schr00280  Valine, leucine and isoleucine degradation
schr00350  Tyrosine metabolism
schr00470  D-Amino acid metabolism
schr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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