KEGG   PATHWAY: schy00020
Entry
schy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas changnyeongensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
schy00020  Citrate cycle (TCA cycle)
schy00020

Module
schy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:schy00020]
schy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:schy00020]
schy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:schy00020]
Other DBs
GO: 0006099
Organism
Sphingomonas changnyeongensis [GN:schy]
Gene
GVO57_10265  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
GVO57_11370  citrate synthase [KO:K01647] [EC:2.3.3.1]
GVO57_10785  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GVO57_07910  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GVO57_07915  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GVO57_07920  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GVO57_11775  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GVO57_07905  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GVO57_02515  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GVO57_04795  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GVO57_07870  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GVO57_04785  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GVO57_04790  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GVO57_03555  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GVO57_03735  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GVO57_07900  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GVO57_08330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GVO57_09625  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GVO57_09630  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GVO57_11785  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
schy00010  Glycolysis / Gluconeogenesis
schy00053  Ascorbate and aldarate metabolism
schy00061  Fatty acid biosynthesis
schy00071  Fatty acid degradation
schy00190  Oxidative phosphorylation
schy00220  Arginine biosynthesis
schy00250  Alanine, aspartate and glutamate metabolism
schy00280  Valine, leucine and isoleucine degradation
schy00350  Tyrosine metabolism
schy00470  D-Amino acid metabolism
schy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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