KEGG   PATHWAY: scl00630
Entry
scl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sorangium cellulosum So ce56
Class
Metabolism; Carbohydrate metabolism
Pathway map
scl00630  Glyoxylate and dicarboxylate metabolism
scl00630

Module
scl_M00012  Glyoxylate cycle [PATH:scl00630]
scl_M00621  Glycine cleavage system [PATH:scl00630]
Other DBs
GO: 0046487 0043648
Organism
Sorangium cellulosum So ce56 [GN:scl]
Gene
sce8726  aceA; High confidence in function and specificity [KO:K01637] [EC:4.1.3.1]
sce7927  acs; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
sce8725  aceB; High confidence in function and specificity [KO:K01638] [EC:2.3.3.9]
sce1050  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
sce1736  Citrate synthase (EC 2.3.3.1). [KO:K01647] [EC:2.3.3.1]
sce1738  cis1; Family membership [KO:K01647] [EC:2.3.3.1]
sce8281  cis2; High confidence in function and specificity [KO:K01647] [EC:2.3.3.1]
sce3926  aco; 3-isopropylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
sce8137  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
sce7652  Acetyl-CoA acyltransferase [KO:K00626] [EC:2.3.1.9]
sce7105  pcaF; Putative beta-ketoadipyl CoA thiolase [KO:K00626] [EC:2.3.1.9]
sce2715  epi; Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
sce0587  probable acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
sce0588  Probable MaoC family protein [KO:K14449] [EC:4.2.1.148]
sce2716  mcm; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
sce1655  putative isobutyryl-CoA mutase, chain B [KO:K01849] [EC:5.4.99.2]
sce7549  Isobutyryl-CoA mutase [KO:K01848] [EC:5.4.99.2]
sce5078  glcD; D-lactate dehydrogenase [KO:K00104] [EC:1.1.99.14]
sce0752  putative glycolate oxidase [KO:K00104] [EC:1.1.99.14]
sce2114  katE; High confidence in function and specificity [KO:K03781] [EC:1.11.1.6]
sce8898  Predicted phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
sce7483  gph2; Hypothetical protein [KO:K01091] [EC:3.1.3.18]
sce5291  gph1; Putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
sce0442  Serine-pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
sce5060  gltB1; Glutamate synthase (NADPH) [KO:K00284] [EC:1.4.7.1]
sce3953  glnA1; Family membership [KO:K01915] [EC:6.3.1.2]
sce7210  glnA2; Glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
sce6587  glyA; Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
sce2012  gcvP1; Glycine dehydrogenase (decarboxylating) [KO:K00282] [EC:1.4.4.2]
sce9164  gcvP2; Glycine dehydrogenase (decarboxylating) [KO:K00283] [EC:1.4.4.2]
sce2014  gcvT1; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
sce8000  pdhD; pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
sce2013  glycine cleavage system protein H homologue [KO:K02437]
sce3558  glxK; High confidence in function and specificity [KO:K00865] [EC:2.7.1.165]
sce2998  hypothetical protein [KO:K11529] [EC:2.7.1.165]
sce5154  kdgA2; KDPG and KHG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
sce1239  kdgA1; High confidence in function and specificity [KO:K01625] [EC:4.1.2.14 4.1.3.42]
sce8492  putative anaerobic reductase component [KO:K00124]
sce1525  hypothetical protein [KO:K07130] [EC:3.5.1.9]
sce0494  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
scl00010  Glycolysis / Gluconeogenesis
scl00020  Citrate cycle (TCA cycle)
scl00030  Pentose phosphate pathway
scl00053  Ascorbate and aldarate metabolism
scl00071  Fatty acid degradation
scl00230  Purine metabolism
scl00250  Alanine, aspartate and glutamate metabolism
scl00260  Glycine, serine and threonine metabolism
scl00620  Pyruvate metabolism
scl00710  Carbon fixation by Calvin cycle
scl00750  Vitamin B6 metabolism
scl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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