KEGG   PATHWAY: sclv00020
Entry
sclv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Styela clava (leathery sea squirt)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sclv00020  Citrate cycle (TCA cycle)
sclv00020

Module
sclv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sclv00020]
sclv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sclv00020]
sclv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sclv00020]
sclv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sclv00020]
sclv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sclv00020]
Other DBs
GO: 0006099
Organism
Styela clava (leathery sea squirt) [GN:sclv]
Gene
120342033  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
120340506  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
120329409  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
120332576  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
120326682  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
120329359  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
120338436  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120339651  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120325462  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120347791  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
120326785  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
120343184  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
120345542  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120335270  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120328183  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120329465  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
120340698  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
120348126  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
120326963  uncharacterized protein LOC120326963 [KO:K00237]
120348381  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
120329060  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120340711  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120338813  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
120332617  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
120348357  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
120338870  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120327181  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sclv00010  Glycolysis / Gluconeogenesis
sclv00053  Ascorbate and aldarate metabolism
sclv00061  Fatty acid biosynthesis
sclv00062  Fatty acid elongation
sclv00071  Fatty acid degradation
sclv00190  Oxidative phosphorylation
sclv00220  Arginine biosynthesis
sclv00250  Alanine, aspartate and glutamate metabolism
sclv00280  Valine, leucine and isoleucine degradation
sclv00350  Tyrosine metabolism
sclv00470  D-Amino acid metabolism
sclv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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