KEGG   PATHWAY: sct00020
Entry
sct00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sct00020  Citrate cycle (TCA cycle)
sct00020

Module
sct_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sct00020]
sct_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sct00020]
sct_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sct00020]
sct_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sct00020]
sct_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sct00020]
Other DBs
GO: 0006099
Organism
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [GN:sct]
Gene
SCAT_0863  Citrate synthase [KO:K01647] [EC:2.3.3.1]
SCAT_0864  putative citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SCAT_1837  gltA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
SCAT_2400  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SCAT_4671  citB; aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
SCAT_p1101  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SCAT_p1480  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
SCAT_4124  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SCAT_0117  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCAT_1303  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
SCAT_3505  Oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SCAT_3504  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SCAT_3703  sucD; succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
SCAT_3702  sucC; succinyl-CoA synthetase (beta subunit) [KO:K01903] [EC:6.2.1.5]
SCAT_5085  putative reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAT_3958  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAT_3761  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAT_5084  Succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCAT_3957  sdhB; putative succinate dehydrogenase iron-sulfur protein (Complex II) [KO:K00240] [EC:1.3.5.1]
SCAT_3760  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCAT_5086  putative cytochrome b subunit [KO:K00241]
SCAT_3763  putative succinate dehydrogenase membrane subunit [KO:K00241]
SCAT_3762  sdhD; putative succinate dehydrogenase hydrophobic membrane anchor protein (Complex II) [KO:K00242]
SCAT_3911  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SCAT_3910  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SCAT_3714  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SCAT_3865  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
SCAT_1481  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SCAT_4425  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SCAT_4424  PDH; Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
SCAT_4423  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SCAT_1304  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sct00010  Glycolysis / Gluconeogenesis
sct00053  Ascorbate and aldarate metabolism
sct00061  Fatty acid biosynthesis
sct00071  Fatty acid degradation
sct00190  Oxidative phosphorylation
sct00220  Arginine biosynthesis
sct00250  Alanine, aspartate and glutamate metabolism
sct00280  Valine, leucine and isoleucine degradation
sct00350  Tyrosine metabolism
sct00470  D-Amino acid metabolism
sct00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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