KEGG   PATHWAY: scx00020
Entry
scx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. CdTB01
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scx00020  Citrate cycle (TCA cycle)
scx00020

Module
scx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scx00020]
scx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scx00020]
scx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scx00020]
scx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scx00020]
scx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scx00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. CdTB01 [GN:scx]
Gene
AS200_28685  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AS200_12850  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
AS200_12855  citrate synthase [KO:K01647] [EC:2.3.3.1]
AS200_25785  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
AS200_12450  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AS200_08195  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AS200_17315  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AS200_31970  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AS200_20770  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AS200_14340  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AS200_20775  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AS200_14335  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AS200_10280  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AS200_19720  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AS200_10285  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AS200_19725  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AS200_19435  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AS200_07725  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AS200_18355  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AS200_19440  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AS200_07720  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AS200_18360  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AS200_19425  succinate dehydrogenase [KO:K00241]
AS200_07730  succinate dehydrogenase [KO:K00241]
AS200_19430  succinate dehydrogenase [KO:K00242]
AS200_18580  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AS200_18585  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AS200_19665  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AS200_37785  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AS200_18835  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AS200_31955  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AS200_30725  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AS200_39900  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AS200_39905  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AS200_39910  dehydrogenase [KO:K00627] [EC:2.3.1.12]
AS200_31965  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AS200_39855  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
AS200_39850  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
AS200_39860  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scx00010  Glycolysis / Gluconeogenesis
scx00053  Ascorbate and aldarate metabolism
scx00061  Fatty acid biosynthesis
scx00071  Fatty acid degradation
scx00190  Oxidative phosphorylation
scx00220  Arginine biosynthesis
scx00250  Alanine, aspartate and glutamate metabolism
scx00280  Valine, leucine and isoleucine degradation
scx00350  Tyrosine metabolism
scx00470  D-Amino acid metabolism
scx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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