KEGG   PATHWAY: sdo00020
Entry
sdo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfitobacter donghicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdo00020  Citrate cycle (TCA cycle)
sdo00020

Module
sdo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sdo00020]
sdo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sdo00020]
sdo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sdo00020]
sdo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sdo00020]
sdo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sdo00020]
Other DBs
GO: 0006099
Organism
Sulfitobacter donghicola [GN:sdo]
Gene
SD1155_10490  citrate synthase [KO:K01647] [EC:2.3.3.1]
SD1155_08910  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
SD1155_10485  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SD1155_09225  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SD1155_09220  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SD1155_07760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SD1155_02160  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SD1155_09660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SD1155_08610  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SD1155_08615  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SD1155_08400  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SD1155_08395  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SD1155_07975  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SD1155_07980  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SD1155_07970  succinate dehydrogenase [KO:K00241]
SD1155_11125  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SD1155_06240  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SD1155_01535  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
SD1155_02840  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
SD1155_07850  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SD1155_10945  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SD1155_07745  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SD1155_07750  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
SD1155_02145  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
SD1155_07755  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sdo00010  Glycolysis / Gluconeogenesis
sdo00061  Fatty acid biosynthesis
sdo00071  Fatty acid degradation
sdo00190  Oxidative phosphorylation
sdo00220  Arginine biosynthesis
sdo00250  Alanine, aspartate and glutamate metabolism
sdo00280  Valine, leucine and isoleucine degradation
sdo00470  D-Amino acid metabolism
sdo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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