KEGG   PATHWAY: sdp03030
Entry
sdp03030                    Pathway                                
Name
DNA replication - Staphylococcus delphini
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sdp03030  DNA replication
sdp03030

Organism
Staphylococcus delphini [GN:sdp]
Gene
NCTC12225_00925  polC_1; DNA polymerase III polC-type [KO:K02342] [EC:2.7.7.7]
NCTC12225_01121  dnaE_1; DNA polymerase III, alpha subunit, truncation [KO:K02337] [EC:2.7.7.7]
NCTC12225_01122  dnaE_2; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
NCTC12225_01310  dnaE_3; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
NCTC12225_01751  polC_2; DNA polymerase III subunit alpha [KO:K03763] [EC:2.7.7.7]
NCTC12225_02540  dnaX_2; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
NCTC12225_02531  dnaX_1; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
NCTC12225_01420  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
NCTC12225_00002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
NCTC12225_00020  dnaB_1; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
NCTC12225_01444  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
NCTC12225_02671  ssb; single-stranded DNA-binding protein [KO:K03111]
NCTC12225_00798  ssbB; ssDNA-binding protein [KO:K03111]
NCTC12225_01567  rnhA; RNase HI [KO:K03469] [EC:3.1.26.4]
NCTC12225_01771  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
NCTC12225_01896  rnhC; ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
NCTC12225_01320  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
NCTC12225_00906  ligA; NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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