KEGG   PATHWAY: sdyn00030
Entry
sdyn00030                   Pathway                                
Name
Pentose phosphate pathway - Symmachiella dynata
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdyn00030  Pentose phosphate pathway
sdyn00030

Module
sdyn_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sdyn00030]
sdyn_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sdyn00030]
Other DBs
GO: 0006098
Organism
Symmachiella dynata [GN:sdyn]
Gene
Mal52_12810  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Mal52_14020  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Mal52_20140  gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Mal52_59490  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Mal52_37790  tktB; Transketolase 2 [KO:K00615] [EC:2.2.1.1]
Mal52_37800  dxs_1; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
Mal52_07650  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
Mal52_02210  hypothetical protein [KO:K01807] [EC:5.3.1.6]
Mal52_26200  rpiB; Ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
Mal52_50650  ywlF; Putative sugar phosphate isomerase YwlF [KO:K01808] [EC:5.3.1.6]
Mal52_58810  xpkA; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
Mal52_57430  rbsK_2; Ribokinase [KO:K00852] [EC:2.7.1.15]
Mal52_11670  pgcA; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Mal52_56370  prs_1; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Mal52_62050  prs_2; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Mal52_14100  kdgA; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Mal52_20370  ycdF_2; Glucose 1-dehydrogenase 2 [KO:K00034] [EC:1.1.1.47]
Mal52_47450  gdhI; Glucose 1-dehydrogenase 1 [KO:K00034] [EC:1.1.1.47]
Mal52_56110  ycdF_4; Glucose 1-dehydrogenase 2 [KO:K00034] [EC:1.1.1.47]
Mal52_48560  adhT; Alcohol dehydrogenase [KO:K22969] [EC:1.1.1.47]
Mal52_23240  HEAT repeat protein [KO:K00117] [EC:1.1.5.2]
Mal52_19640  gnl_1; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_24720  gnl_2; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_32710  gnl_3; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_40440  gnl_4; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_41980  gnl_5; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_51760  gnl_6; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Mal52_06160  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Mal52_05800  ydhV; putative oxidoreductase YdhV [KO:K03738] [EC:1.2.7.5]
Mal52_39230  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Mal52_38630  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
Mal52_53960  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Mal52_26990  fbp_2; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Mal52_02500  pfkA; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Mal52_20120  pfkA1_1; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Mal52_35820  pfkA1_2; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sdyn00010  Glycolysis / Gluconeogenesis
sdyn00040  Pentose and glucuronate interconversions
sdyn00052  Galactose metabolism
sdyn00230  Purine metabolism
sdyn00240  Pyrimidine metabolism
sdyn00340  Histidine metabolism
sdyn00630  Glyoxylate and dicarboxylate metabolism
sdyn00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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