KEGG   PATHWAY: serm00630
Entry
serm00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Serratia sp. MYb239
Class
Metabolism; Carbohydrate metabolism
Pathway map
serm00630  Glyoxylate and dicarboxylate metabolism
serm00630

Module
serm_M00012  Glyoxylate cycle [PATH:serm00630]
serm_M00621  Glycine cleavage system [PATH:serm00630]
Other DBs
GO: 0046487 0043648
Organism
Serratia sp. MYb239 [GN:serm]
Gene
CLM71_21705  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
CLM71_01510  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CLM71_21710  malate synthase A [KO:K01638] [EC:2.3.3.9]
CLM71_01925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CLM71_05745  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CLM71_12525  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CLM71_19540  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CLM71_16245  catalase [KO:K03781] [EC:1.11.1.6]
CLM71_13215  glyoxylate/hydroxypyruvate reductase GhrA [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CLM71_00100  glyoxylate/hydroxypyruvate reductase GhrB [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CLM71_22225  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CLM71_23395  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CLM71_16115  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CLM71_17905  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CLM71_19090  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
CLM71_19100  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CLM71_19545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLM71_19095  gcvH; glycine cleavage system protein H [KO:K02437]
CLM71_12065  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CLM71_03640  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CLM71_03645  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CLM71_05190  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CLM71_13030  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CLM71_21695  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CLM71_05875  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
CLM71_00200  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
CLM71_00205  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
CLM71_00210  fdxH; formate dehydrogenase subunit beta [KO:K00124]
CLM71_00215  formate dehydrogenase cytochrome b556 subunit [KO:K00127]
CLM71_15055  esterase [KO:K01432] [EC:3.5.1.9]
CLM71_12785  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CLM71_16140  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CLM71_09430  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
serm00010  Glycolysis / Gluconeogenesis
serm00020  Citrate cycle (TCA cycle)
serm00030  Pentose phosphate pathway
serm00053  Ascorbate and aldarate metabolism
serm00071  Fatty acid degradation
serm00230  Purine metabolism
serm00250  Alanine, aspartate and glutamate metabolism
serm00260  Glycine, serine and threonine metabolism
serm00620  Pyruvate metabolism
serm00710  Carbon fixation by Calvin cycle
serm00750  Vitamin B6 metabolism
serm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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