KEGG   PATHWAY: serm00030
Entry
serm00030                   Pathway                                
Name
Pentose phosphate pathway - Serratia sp. MYb239
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
serm00030  Pentose phosphate pathway
serm00030

Module
serm_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:serm00030]
serm_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:serm00030]
serm_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:serm00030]
serm_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:serm00030]
serm_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:serm00030]
serm_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:serm00030]
Other DBs
GO: 0006098
Organism
Serratia sp. MYb239 [GN:serm]
Gene
CLM71_21640  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CLM71_13035  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
CLM71_00560  epimerase [KO:K19243] [EC:1.1.1.388]
CLM71_05975  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
CLM71_21155  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
CLM71_07410  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CLM71_22230  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
CLM71_19865  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_19870  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_17215  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_12135  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_12140  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_16435  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_16440  transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_19190  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CLM71_03105  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CLM71_17210  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CLM71_19145  ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
CLM71_17205  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
CLM71_02965  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CLM71_07535  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CLM71_23510  ribokinase [KO:K00852] [EC:2.7.1.15]
CLM71_02975  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
CLM71_05645  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
CLM71_02195  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
CLM71_13300  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CLM71_22055  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CLM71_21690  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
CLM71_13030  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CLM71_21695  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CLM71_09485  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
CLM71_11780  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
CLM71_06750  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
CLM71_21495  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
CLM71_09735  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
CLM71_06745  hypothetical protein [KO:K06152] [EC:1.1.99.3]
CLM71_21490  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
CLM71_09730  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
CLM71_00100  glyoxylate/hydroxypyruvate reductase GhrB [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CLM71_21680  gluconokinase [KO:K00851] [EC:2.7.1.12]
CLM71_22455  gluconokinase [KO:K00851] [EC:2.7.1.12]
CLM71_00110  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
CLM71_22745  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
CLM71_17520  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
CLM71_19170  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CLM71_12385  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CLM71_01900  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
CLM71_23015  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CLM71_23050  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
CLM71_12370  permease [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
serm00010  Glycolysis / Gluconeogenesis
serm00040  Pentose and glucuronate interconversions
serm00052  Galactose metabolism
serm00230  Purine metabolism
serm00240  Pyrimidine metabolism
serm00340  Histidine metabolism
serm00630  Glyoxylate and dicarboxylate metabolism
serm00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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